Rice proteomics: A move toward expanded proteome coverage to comparative and functional proteomics uncovers the mysteries of rice and plant biology

Abscisic acid pretreatment enhances salt tolerance of rice seedlings: Proteomic evidence

(2010) Xiao-Juan Li et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

From 2-D electrophoresis to proteomics

(2010) Joachim Klose   ELECTROPHORESIS

Membrane proteins and proteomics: Love is possible, but so difficult

(2010) Thierry Rabilloud   ELECTROPHORESIS

Immobilized pH gradients

(2010) Elisabetta Gianazza et al.   ELECTROPHORESIS

Difference gel electrophoresis

(2010) Jonathan S. Minden et al.   ELECTROPHORESIS

Changes in Protein Expression Profiles between a Low Phytic Acid Rice (Oryza sativa L. Ssp.japonica) Line and Its Parental Line: A Proteomic and Bioinformatic Approach

(2010) Kaveh Emami et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Identification of Extracellular Matrix Proteins of Rice (Oryza sativaL.) Involved in Dehydration-Responsive Network: A Proteomic Approach

(2010) Aarti Pandey et al.   JOURNAL OF PROTEOME RESEARCH

Template Proteogenomics: Sequencing Whole Proteins Using an Imperfect Database

(2010) Natalie E. Castellana et al.   MOLECULAR & CELLULAR PROTEOMICS

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

Systems Analysis of Seed Filling in Arabidopsis: Using General Linear Modeling to Assess Concordance of Transcript and Protein Expression

(2010) M. Hajduch et al.   PLANT PHYSIOLOGY

Large-Scale Comparative Phosphoproteomics Identifies Conserved Phosphorylation Sites in Plants

(2010) H. Nakagami et al.   PLANT PHYSIOLOGY

Isolation and identification of cytoskeleton-associated prolamine mRNA binding proteins from developing rice seeds

(2010) Andrew J. Crofts et al.   PLANTA

Differential metabolic response of cultured rice (Oryza sativa) cells exposed to high- and low-temperature stress

(2010) Chumithri Gayani Gammulla et al.   PROTEOMICS

Proteomic analysis of rice seedlings infected by Sinorhizobium meliloti 1021

(2010) Feng Chi et al.   PROTEOMICS

Proteomic identification of small, copper-responsive proteins in germinating embryos of Oryza sativa

(2009) Hongxiao Zhang et al.   ANNALS OF BOTANY

A comparative proteomic analysis of rice seedlings under various high-temperature stresses

(2009) Feng Han et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Analysis of arsenic stress-induced differentially expressed proteins in rice leaves by two-dimensional gel electrophoresis coupled with mass spectrometry

(2009) Nagib Ahsan et al.   CHEMOSPHERE

Deciphering the proteomic profile of rice(Oryza sativa)bran: A pilot study

(2009) Fabio Ferrari et al.   ELECTROPHORESIS

Hares and tortoises: The high- versus low-throughput proteomic race

(2009) Marc R. Wilkins   ELECTROPHORESIS

2-DE with IPGs

(2009) Angelika Görg et al.   ELECTROPHORESIS

Physiological and molecular changes in Oryza meridionalis Ng., a heat-tolerant species of wild rice

(2009) Andrew P. Scafaro et al.   JOURNAL OF EXPERIMENTAL BOTANY

Physiological and proteomic approaches to address heat tolerance during anthesis in rice (Oryza sativa L.)

(2009) S. V. K. Jagadish et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative proteomic analysis of the short-term responses of rice roots and leaves to cadmium

(2009) Kyunghee Lee et al.   JOURNAL OF PLANT PHYSIOLOGY

Proteomic Analysis of Cytoskeleton-Associated RNA Binding Proteins in Developing Rice Seed

(2009) Kelly A. Doroshenk et al.   JOURNAL OF PROTEOME RESEARCH

Identification of Proteinaceous Inhibitors of a Cysteine Proteinase (an Arg-Specific Gingipain) fromPorphyromonas gingivalisin Rice Grain, Using Targeted-Proteomics Approaches

(2009) Mayumi Taiyoji et al.   JOURNAL OF PROTEOME RESEARCH

Developing Rice Embryo Proteomics Reveals Essential Role for Embryonic Proteins in Regulation of Seed Germination

(2009) Sun Tae Kim et al.   JOURNAL OF PROTEOME RESEARCH

Application of Rice Nuclear Proteome Analysis to the Identification of Evolutionarily Conserved and Glucose-Responsive Nuclear Proteins

(2009) Toshihiko Aki et al.   JOURNAL OF PROTEOME RESEARCH

Dehydration-responsive Nuclear Proteome of Rice (Oryza sativaL.) Illustrates Protein Network, Novel Regulators of Cellular Adaptation, and Evolutionary Perspective

(2009) Mani Kant Choudhary et al.   MOLECULAR & CELLULAR PROTEOMICS

Proteomic analysis of the secretome of rice calli

(2009) Won Kyong Cho et al.   PHYSIOLOGIA PLANTARUM

Proteome Analysis of Detergent-Resistant Membranes (DRMs) Associated with OsRac1-Mediated Innate Immunity in Rice

(2009) Masayuki Fujiwara et al.   PLANT AND CELL PHYSIOLOGY

Refining the Definition of Plant Mitochondrial Presequences through Analysis of Sorting Signals, N-Terminal Modifications, and Cleavage Motifs

(2009) S. Huang et al.   PLANT PHYSIOLOGY

Quantitative Proteomics of Seed Filling in Castor: Comparison with Soybean and Rapeseed Reveals Differences between Photosynthetic and Nonphotosynthetic Seed Metabolism

(2009) N. L. Houston et al.   PLANT PHYSIOLOGY

Large-Scale Phosphoprotein Analysis in Medicago truncatula Roots Provides Insight into in Vivo Kinase Activity in Legumes

(2009) P. A. Grimsrud et al.   PLANT PHYSIOLOGY

Post-Genomics Studies of Developmental Processes in Legume Seeds

(2009) R. Thompson et al.   PLANT PHYSIOLOGY

Mitochondrial proteome during salt stress-induced programmed cell death in rice

(2009) Xi Chen et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Proteomics reveals the effects of gibberellic acid (GA3) on salt-stressed rice (Oryza sativa L.) shoots

(2009) Fu-ping Wen et al.   PLANT SCIENCE

Insight into the salt tolerance factors of a wild halophytic rice, Porteresia coarctata: a physiological and proteomic approach

(2009) Sonali Sengupta et al.   PLANTA

Quantitative Proteomic Analysis of CMS-Related Changes in Honglian CMS Rice Anther

(2009) Qingping Sun et al.   PROTEIN JOURNAL

Understanding the molecular basis of plant growth promotional effect of Pseudomonas fluorescens on rice through protein profiling

(2009) Saveetha Kandasamy et al.   Proteome Science

Understanding rice plant resistance to the Brown Planthopper (Nilaparvata lugens): A proteomic approach

(2009) Zhe Wei et al.   PROTEOMICS

Secretome analysis of differentially induced proteins in rice suspension-cultured cells triggered by rice blast fungus and elicitor

(2009) Sun Tae Kim et al.   PROTEOMICS

Identification of elicitor-responsive proteins in rice leaves by a proteomic approach

(2009) Ming Liao et al.   PROTEOMICS

Rice proteomics: Ending phase I and the beginning of phase II

(2009) Ganesh Kumar Agrawal et al.   PROTEOMICS

Plant phosphoproteomics: An update

(2009) Birgit Kersten et al.   PROTEOMICS

New changes in the plasma-membrane-associated proteome of rice roots under salt stress

(2009) Yanwei Cheng et al.   PROTEOMICS

Plant secretome: Unlocking secrets of the secreted proteins

(2009) Ganesh Kumar Agrawal et al.   PROTEOMICS

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Arabidopsis thaliana as a model organism in systems biology

(2009) Jaimie M. Van Norman et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Gel-based proteomics approach for detecting low nitrogen-responsive proteins in cultivated rice species

(2009) Du Hyun Kim et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Proteomic analysis of phosphoproteins regulated by abscisic acid in rice leaves

(2008) Huaqin He et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Differential regulation of proteins and phosphoproteins in rice under drought stress

(2008) Yuqin Ke et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Differential proteomic analysis of soluble extracellular proteins reveals the cysteine protease and cystatin involved in suspension-cultured cell proliferation in rice

(2008) Lihong Tian et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Comparative analysis of young panicle proteome in thermo-sensitive genic male-sterile rice Zhu-1S under sterile and fertile conditions

(2008) Xiaojuan Xiao et al.   BIOTECHNOLOGY LETTERS

Identification of drought-responsive genes in roots of upland rice (Oryza sativa L)

(2008) Aline R Rabello et al.   BMC GENOMICS

The Impact of Arabidopsis on Human Health: Diversifying Our Portfolio

(2008) Alan M. Jones et al.   CELL

Removal of high-abundance proteins for nuclear subproteome studies in rice (Oryza sativa) endosperm

(2008) Guosheng Li et al.   ELECTROPHORESIS

Proteomics of weakly bound cell wall proteins in rice calli

(2008) Xiong-Yan Chen et al.   JOURNAL OF PLANT PHYSIOLOGY

Chilling stress-induced proteomic changes in rice roots

(2008) Dong-Gi Lee et al.   JOURNAL OF PLANT PHYSIOLOGY

Systematic Secretome Analyses of Rice Leaf and Seed Callus Suspension-Cultured Cells: Workflow Development and Establishment of High-Density Two-Dimensional Gel Reference Maps

(2008) Young-Ho Jung et al.   JOURNAL OF PROTEOME RESEARCH

Proteomics Analysis of Rice Lesion Mimic Mutant (spl1) Reveals Tightly Localized Probenazole-Induced Protein (PBZ1) in Cells Undergoing Programmed Cell Death

(2008) Sun Tae Kim et al.   JOURNAL OF PROTEOME RESEARCH

Integrated Transcriptomics, Proteomics, and Metabolomics Analyses To Survey Ozone Responses in the Leaves of Rice Seedling

(2008) Kyoungwon Cho et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic Analysis of Rice Endosperm Cells in Response to Expression of hGM-CSF

(2008) Junling Luo et al.   JOURNAL OF PROTEOME RESEARCH

Affinity separation and enrichment methods in proteomic analysis

(2008) Xiangming Fang et al.   Journal of Proteomics

Comparative Proteomics Analysis Reveals an Intimate Protein Network Provoked by Hydrogen Peroxide Stress in Rice Seedling Leaves

(2008) Xiang-Yuan Wan et al.   MOLECULAR & CELLULAR PROTEOMICS

Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis

(2008) Naoyuki Sugiyama et al.   Molecular Systems Biology

Pathogenesis-related proteins in somatic hybrid rice induced by bacterial blight

(2008) Chu L. Yu et al.   PHYTOCHEMISTRY

Nano Scale Proteomics Revealed the Presence of Regulatory Proteins Including Three FT-Like proteins in Phloem and Xylem Saps from Rice

(2008) Toshihiko Aki et al.   PLANT AND CELL PHYSIOLOGY

Spermidine Exodus and Oxidation in the Apoplast Induced by Abiotic Stress Is Responsible for H2O2 Signatures That Direct Tolerance Responses in Tobacco

(2008) P. N. Moschou et al.   PLANT CELL

A proteomic and phosphoproteomic analysis ofOryza sativaplasma membrane and vacuolar membrane

(2008) Sally-Anne Whiteman et al.   PLANT JOURNAL

The cytoplasmic-localized, cytoskeletal-associated RNA binding proteinOsTudor-SN: evidence for an essential role in storage protein RNA transport and localization

(2008) Changlin Wang et al.   PLANT JOURNAL

Exploring the nuclear proteome ofMedicago truncatulaat the switch towards seed filling

(2008) Ombretta Repetto et al.   PLANT JOURNAL

Experimental Analysis of the Rice Mitochondrial Proteome, Its Biogenesis, and Heterogeneity

(2008) S. Huang et al.   PLANT PHYSIOLOGY

In-Depth Investigation of the Soybean Seed-Filling Proteome and Comparison with a Parallel Study of Rapeseed

(2008) G. K. Agrawal et al.   PLANT PHYSIOLOGY

Dynamic Proteomic Analysis Reveals a Switch between Central Carbon Metabolism and Alcoholic Fermentation in Rice Filling Grains

(2008) S. B. Xu et al.   PLANT PHYSIOLOGY

Identification of an Apoplastic Protein Involved in the Initial Phase of Salt Stress Response in Rice Root by Two-Dimensional Electrophoresis

(2008) L. Zhang et al.   PLANT PHYSIOLOGY

Glyphosate-induced oxidative stress in rice leaves revealed by proteomic approach

(2008) Nagib Ahsan et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Discovery and revision of Arabidopsis genes by proteogenomics

(2008) N. E. Castellana et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteomic profiling of rice embryos from a hybrid rice cultivar and its parental lines

(2008) Weiwei Wang et al.   PROTEOMICS

Comparative proteomic study of arsenic-induced differentially expressed proteins in rice roots reveals glutathione plays a central role during As stress

(2008) Nagib Ahsan et al.   PROTEOMICS

The pre-omics era: The early days of two-dimensional gels

(2008) Patrick H. O'Farrell   PROTEOMICS

Analysis of embryonic proteome modulation by GA and ABA from germinating rice seeds

(2008) Sun Tae Kim et al.   PROTEOMICS

Difference gel electrophoresis

(2008) John F. Timms et al.   PROTEOMICS

A comparative proteome approach to decipher the mechanism of rice adaptation to phosphorous deficiency

(2008) Sepideh Torabi et al.   PROTEOMICS

Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics

(2008) K. Baerenfaller et al.   SCIENCE