Time to articulate a vision for the future of plant proteomics - A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO)

From 2-D electrophoresis to proteomics

(2010) Joachim Klose   ELECTROPHORESIS

Membrane proteins and proteomics: Love is possible, but so difficult

(2010) Thierry Rabilloud   ELECTROPHORESIS

Immobilized pH gradients

(2010) Elisabetta Gianazza et al.   ELECTROPHORESIS

Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: A historical perspective

(2010) Nicolas Guex et al.   ELECTROPHORESIS

Modelling the crop: from system dynamics to systems biology

(2010) Xinyou Yin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Megadalton Complexes in the Chloroplast Stroma ofArabidopsis thalianaCharacterized by Size Exclusion Chromatography, Mass Spectrometry, and Hierarchical Clustering

(2010) Paul Dominic B. Olinares et al.   MOLECULAR & CELLULAR PROTEOMICS

Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses

(2010) Stefanie Wienkoop et al.   Molecular BioSystems

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

The development of Arabidopsis as a model plant

(2010) Maarten Koornneef et al.   PLANT JOURNAL

Reconstruction of Metabolic Pathways, Protein Expression, and Homeostasis Machineries across Maize Bundle Sheath and Mesophyll Chloroplasts: Large-Scale Quantitative Proteomics Using the First Maize Genome Assembly

(2010) G. Friso et al.   PLANT PHYSIOLOGY

Large-Scale Comparative Phosphoproteomics Identifies Conserved Phosphorylation Sites in Plants

(2010) H. Nakagami et al.   PLANT PHYSIOLOGY

Workflow for Large Scale Detection and Validation of Peptide Modifications by RPLC-LTQ-Orbitrap: Application to theArabidopsis thalianaLeaf Proteome and an Online Modified Peptide Library

(2009) Boris Zybailov et al.   ANALYTICAL CHEMISTRY

Proteomics by Mass Spectrometry: Approaches, Advances, and Applications

(2009) John R. Yates et al.   Annual Review of Biomedical Engineering

Integrated omics approaches in plant systems biology

(2009) Atsushi Fukushima et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Proteomics shed light on the brassinosteroid signaling mechanisms

(2009) Wenqiang Tang et al.   CURRENT OPINION IN PLANT BIOLOGY

Hares and tortoises: The high- versus low-throughput proteomic race

(2009) Marc R. Wilkins   ELECTROPHORESIS

2-DE with IPGs

(2009) Angelika Görg et al.   ELECTROPHORESIS

Large Scale Comparative Proteomics of a Chloroplast Clp Protease Mutant Reveals Folding Stress, Altered Protein Homeostasis, and Feedback Regulation of Metabolism

(2009) Boris Zybailov et al.   MOLECULAR & CELLULAR PROTEOMICS

PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update

(2009) Pawel Durek et al.   NUCLEIC ACIDS RESEARCH

Plant phosphoproteomics: An update

(2009) Birgit Kersten et al.   PROTEOMICS

Proteomic analysis of temperature stress in plants

(2009) Karlie A. Neilson et al.   PROTEOMICS

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Cell-type-specific differentiation of chloroplasts in C4 plants

(2009) Wojciech Majeran et al.   TRENDS IN PLANT SCIENCE

Protein tyrosine phosphorylation in plants: more abundant than expected?

(2009) Sergio de la Fuente van Bentem et al.   TRENDS IN PLANT SCIENCE

Arabidopsis thaliana as a model organism in systems biology

(2009) Jaimie M. Van Norman et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Systems Approaches to Identifying Gene Regulatory Networks in Plants

(2008) Terri A. Long et al.   Annual Review of Cell and Developmental Biology

The Impact of Arabidopsis on Human Health: Diversifying Our Portfolio

(2008) Alan M. Jones et al.   CELL

The MultinationalArabidopsisSteering Subcommittee for Proteomics Assembles the Largest Proteome Database Resource for Plant Systems Biology

(2008) Wolfram Weckwerth et al.   JOURNAL OF PROTEOME RESEARCH

Proteome analysis of non-model plants: A challenging but powerful approach

(2008) Sebastien Christian Carpentier et al.   MASS SPECTROMETRY REVIEWS

Integration of Metabolomic and Proteomic Phenotypes

(2008) Stefanie Wienkoop et al.   MOLECULAR & CELLULAR PROTEOMICS

PPDB, the Plant Proteomics Database at Cornell

(2008) Qi Sun et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis Reactome: A Foundation Knowledgebase for Plant Systems Biology

(2008) N. Tsesmetzis et al.   PLANT CELL

If the antibody fails - a mass Western approach

(2008) Ute Lehmann et al.   PLANT JOURNAL

In-Depth Investigation of the Soybean Seed-Filling Proteome and Comparison with a Parallel Study of Rapeseed

(2008) G. K. Agrawal et al.   PLANT PHYSIOLOGY

Proteome-wide characterization of sugarbeet seed vigor and its tissue specific expression

(2008) J. Catusse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics

(2008) M. E. Sardiu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BSKs Mediate Signal Transduction from the Receptor Kinase BRI1 in Arabidopsis

(2008) W. Tang et al.   SCIENCE

Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics

(2008) K. Baerenfaller et al.   SCIENCE

Post-genomics dissection of seed dormancy and germination

(2007) Michael J. Holdsworth et al.   TRENDS IN PLANT SCIENCE