Isolation and characterization of plant protein complexes by mass spectrometry

Determination of Protein Stoichiometry within Protein Complexes Using Absolute Quantification and Multiple Reaction Monitoring

(2010) Carla Schmidt et al.   ANALYTICAL CHEMISTRY

Commonly used tag combinations for tandem affinity purification

(2010) Yifeng Li   BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY

Quantitative Interaction Proteomics and Genome-wide Profiling of Epigenetic Histone Marks and Their Readers

(2010) Michiel Vermeulen et al.   CELL

Affinity Purification of theArabidopsis26 S Proteasome Reveals a Diverse Array of Plant Proteolytic Complexes

(2010) Adam J. Book et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Quantitative Analysis of Protein Complex Constituents and Their Phosphorylation States on a LTQ-Orbitrap Instrument

(2010) Cédric Przybylski et al.   JOURNAL OF PROTEOME RESEARCH

Characterization of Cell Cycle Specific Protein Interaction Networks of the Yeast 26S Proteasome Complex by the QTAX Strategy

(2010) Robyn M. Kaake et al.   JOURNAL OF PROTEOME RESEARCH

Crosslinking combined with mass spectrometry for structural proteomics

(2010) Evgeniy V. Petrotchenko et al.   MASS SPECTROMETRY REVIEWS

Revealing Novel Telomere Proteins Usingin VivoCross-linking, Tandem Affinity Purification, and Label-free Quantitative LC-FTICR-MS

(2010) Thalia Nittis et al.   MOLECULAR & CELLULAR PROTEOMICS

Megadalton Complexes in the Chloroplast Stroma ofArabidopsis thalianaCharacterized by Size Exclusion Chromatography, Mass Spectrometry, and Hierarchical Clustering

(2010) Paul Dominic B. Olinares et al.   MOLECULAR & CELLULAR PROTEOMICS

Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana

(2010) Jelle Van Leene et al.   Molecular Systems Biology

In vitro genetic reconstruction of bacterial transcription initiation by coupled synthesis and detection of RNA polymerase holoenzyme

(2010) Haruichi Asahara et al.   NUCLEIC ACIDS RESEARCH

A Global Protein Kinase and Phosphatase Interaction Network in Yeast

(2010) A. Breitkreutz et al.   SCIENCE

Systematic Analysis of Human Protein Complexes Identifies Chromosome Segregation Proteins

(2010) J. R. A. Hutchins et al.   SCIENCE

Highly Divergent Mitochondrial ATP Synthase Complexes in Tetrahymena thermophila

(2010) Praveen Balabaskaran Nina et al.   PLOS BIOLOGY

Stoichiometry Determination of the MP1−p14 Complex Using a Novel and Cost-Efficient Method To Produce an Equimolar Mixture of Standard Peptides

(2009) Johann Holzmann et al.   ANALYTICAL CHEMISTRY

Quantitative interaction proteomics using mass spectrometry

(2009) Alexander Wepf et al.   NATURE METHODS

A 1-Megadalton Translocation Complex Containing Tic20 and Tic21 Mediates Chloroplast Protein Import at the Inner Envelope Membrane

(2009) S. Kikuchi et al.   PLANT CELL

Protein-Protein Interactions of Tandem Affinity Purified Protein Kinases from Rice

(2009) Jai S. Rohila et al.   PLoS One

Quantitative mass spectrometry of TATA binding protein-containing complexes and subunit phosphorylations during the cell cycle

(2009) WWM Pim Pijnappel et al.   Proteome Science

A bioanalytical method for the proteome wide display and analysis of protein complexes from whole plant cell lysates

(2009) Noor Remmerie et al.   PROTEOMICS

A “Tagless” Strategy for Identification of Stable Protein Complexes Genome-wide by Multidimensional Orthogonal Chromatographic Separation and iTRAQ Reagent Tracking

(2008) Ming Dong et al.   JOURNAL OF PROTEOME RESEARCH

Absolute SILAC for Accurate Quantitation of Proteins in Complex Mixtures Down to the Attomole Level

(2008) Stefan Hanke et al.   JOURNAL OF PROTEOME RESEARCH

In VivoInteractome ofHelicobacter pyloriUrease Revealed by Tandem Affinity Purification

(2008) Kerstin Stingl et al.   MOLECULAR & CELLULAR PROTEOMICS

A PP2A Phosphatase High Density Interaction Network Identifies a Novel Striatin-interacting Phosphatase and Kinase Complex Linked to the Cerebral Cavernous Malformation 3 (CCM3) Protein

(2008) Marilyn Goudreault et al.   MOLECULAR & CELLULAR PROTEOMICS

Identification of Protein-Protein Interactions and Topologies in Living Cells with Chemical Cross-linking and Mass Spectrometry

(2008) Haizhen Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

A map of human protein interactions derived from co-expression of human mRNAs and their orthologs

(2008) Arun K Ramani et al.   Molecular Systems Biology

Erratum: Corrigendum: Identification of cross-linked peptides from large sequence databases

(2008) Oliver Rinner et al.   NATURE METHODS

Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics

(2008) M. E. Sardiu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discrimination between stable and dynamic components of protein complexes by means of quantitative proteomics

(2008) Keiji Kito et al.   PROTEOMICS

Boosting tandem affinity purification of plant protein complexes

(2008) Jelle Van Leene et al.   TRENDS IN PLANT SCIENCE

Toward chromatographic analysis of interacting protein networks

(2007) Xiuping Liu et al.   JOURNAL OF CHROMATOGRAPHY A