Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests

(2013) Valerio Mariani et al.   BIOINFORMATICS

CAD-score: A new contact area difference-based function for evaluation of protein structural models

(2013) Kliment Olechnovič et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL

(2013) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Critical assessment of methods of protein structure prediction (CASP) - round x

(2013) John Moult et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of ligand binding site predictions in CASP10

(2013) Tiziano Gallo Cassarino et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The Bacteriophage T7 Virion Undergoes Extensive Structural Remodeling During Infection

(2013) B. Hu et al.   SCIENCE

Mechanisms of molecular transport through the urea channel of Helicobacter pylori

(2013) Reginald McNulty et al.   Nature Communications

Crystallization of the C-terminal domain of the bacteriophage T7 fibre protein gp17

(2012) Carmela Garcia-Doval et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

A suggested new bacteriophage genus: “Viunalikevirus”

(2012) Evelien M. Adriaenssens et al.   ARCHIVES OF VIROLOGY

The mechanism of shared but distinct CSF-1R signaling by the non-homologous cytokines IL-34 and CSF-1

(2012) Heli Liu et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Natural and Engineered Cystine Knot Miniproteins for Diagnostic and Therapeutic Applications

(2012) Harald Kolmar   CURRENT PHARMACEUTICAL DESIGN

Related Giant Viruses in Distant Locations and Different Habitats: Acanthamoeba polyphaga moumouvirus Represents a Third Lineage of the Mimiviridae That Is Close to the Megavirus Lineage

(2012) Niyaz Yoosuf et al.   Genome Biology and Evolution

Structure of the proton-gated urea channel from the gastric pathogen Helicobacter pylori

(2012) David Strugatsky et al.   NATURE

Exploring ORFan Domains in Giant Viruses: Structure of Mimivirus Sulfhydryl Oxidase R596

(2012) Motti Hakim et al.   PLoS One

Structure of the receptor-binding carboxy-terminal domain of bacteriophage T7 tail fibers

(2012) C. Garcia-Doval et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Basis for the Dual Recognition of Helical Cytokines IL-34 and CSF-1 by CSF-1R

(2012) Xiaolei Ma et al.   STRUCTURE

Phage Pierces the Host Cell Membrane with the Iron-Loaded Spike

(2012) Christopher Browning et al.   STRUCTURE

Bacteriophages and their Implications on Future Biotechnology: A Review

(2012) Irshad UL Haq et al.   Virology Journal

Artificial Neural Networks Trained to Detect Viral and Phage Structural Proteins

(2012) Victor Seguritan et al.   PLoS Computational Biology

Atomic Structure of Bacteriophage Sf6 Tail Needle Knob

(2011) Anshul Bhardwaj et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Four Small Puzzles That Rosetta Doesn't Solve

(2011) Rhiju Das   PLoS One

Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction

(2011) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Mimivirus reveals Mre11/Rad50 fusion proteins with a sporadic distribution in eukaryotes, bacteria, viruses and plasmids

(2011) Takashi Yoshida et al.   Virology Journal

Characterization of a ViI-like Phage Specific to Escherichia coli O157:H7

(2011) Elizabeth M Kutter et al.   Virology Journal

Dali server: conservation mapping in 3D

(2010) Liisa Holm et al.   NUCLEIC ACIDS RESEARCH

Engineered Knottin Peptides: A New Class of Agents for Imaging Integrin Expression in Living Subjects

(2009) R. H. Kimura et al.   CANCER RESEARCH

Crystallographic Insights into the Autocatalytic Assembly Mechanism of a Bacteriophage Tail Spike

(2009) Ye Xiang et al.   MOLECULAR CELL

Engineered cystine knot peptides that bind αvβ3, αvβ5, and α5β1 integrins with low-nanomolar affinity

(2009) Richard H. Kimura et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Fast and accurate automatic structure prediction with HHpred

(2009) Andrea Hildebrand et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Outcome of a Workshop on Applications of Protein Models in Biomedical Research

(2009) Torsten Schwede et al.   STRUCTURE

The conserved baculovirus protein p33 (Ac92) is a flavin adenine dinucleotide-linked sulfhydryl oxidase

(2009) C.M. Long et al.   VIROLOGY

Optimal Foraging by Bacteriophages through Host Avoidance

(2008) Richard H. Heineman et al.   AMERICAN NATURALIST

A novel trehalose synthesizing pathway in the hyperthermophilic Crenarchaeon Thermoproteus tenax: the unidirectional TreT pathway

(2008) Theresa Kouril et al.   ARCHIVES OF MICROBIOLOGY

Crystal structure ofEscherichia coliphage HK620 tailspike: podoviral tailspike endoglycosidase modules are evolutionarily related

(2008) Stefanie Barbirz et al.   MOLECULAR MICROBIOLOGY

Structure of macrophage colony stimulating factor bound to FMS: Diverse signaling assemblies of class III receptor tyrosine kinases

(2008) X. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discovery of a Cytokine and Its Receptor by Functional Screening of the Extracellular Proteome

(2008) H. Lin et al.   SCIENCE

An Intersubunit Active Site between Supercoiled Parallel β Helices in the Trimeric Tailspike Endorhamnosidase of Shigella flexneri Phage Sf6

(2008) Jürgen J. Müller et al.   STRUCTURE

The Erv family of sulfhydryl oxidases

(2007) Deborah Fass   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH