Fragment-based modeling of membrane protein loops: Successes, failures, and prospects for the future

Loop prediction for a GPCR homology model: Algorithms and results

(2013) Dahlia A. Goldfeld et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

MP-T: improving membrane protein alignment for structure prediction

(2012) Jamie R. Hill et al.   BIOINFORMATICS

Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis

(2012) T. Nugent et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environment specific substitution tables improve membrane protein alignment

(2011) J. R. Hill et al.   BIOINFORMATICS

Predicting antibody complementarity determining region structures without classification

(2011) Yoonjoo Choi et al.   Molecular BioSystems

Progress in super long loop prediction

(2011) Suwen Zhao et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

MEDELLER: homology-based coordinate generation for membrane proteins

(2010) Sebastian Kelm et al.   BIOINFORMATICS

Protein loop modeling by using fragment assembly and analytical loop closure

(2010) Julian Lee et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Development of a new physics-based internal coordinate mechanics force field and its application to protein loop modeling

(2010) Yelena A. Arnautova et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

iMembrane: homology-based membrane-insertion of proteins

(2009) Sebastian Kelm et al.   BIOINFORMATICS

SuperLooper--a prediction server for the modeling of loops in globular and membrane proteins

(2009) P. W. Hildebrand et al.   NUCLEIC ACIDS RESEARCH

CONSTANT TIME CLASH DETECTION IN PROTEIN FOLDING

(2009) MIGUEL M. F. BUGALHO et al.   Journal of Bioinformatics and Computational Biology

Coarse-Grained MD Simulations of Membrane Protein-Bilayer Self-Assembly

(2008) Kathryn A. Scott et al.   STRUCTURE