Function-based assessment of structural similarity measurements using metal co-factor orientation

News from the Protein Mutability Landscape

(2013) Maximilian Hecht et al.   JOURNAL OF MOLECULAR BIOLOGY

Towards the development of standardized methods for comparison, ranking and evaluation of structure alignments

(2012) A. W. Slater et al.   BIOINFORMATICS

TrAnsFuSE refines the search for protein function: oxidoreductases

(2012) Arye Harel et al.   Integrative Biology

Detection of Spatial Correlations in Protein Structures and Molecular Complexes

(2012) Manfred J. Sippl et al.   STRUCTURE

Energetic Selection of Topology in Ferredoxins

(2012) J. Dongun Kim et al.   PLoS Computational Biology

Exploring the limits of fold discrimination by structural alignment: A large scale benchmark using decoys of known fold

(2011) Siv Midtun Hollup et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Structural Basis for Reductive Radical Formation and Electron Recycling in (R)-2-Hydroxyisocaproyl-CoA Dehydratase

(2011) Stefan H. Knauer et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

How significant is a protein structure similarity with TM-score = 0.5?

(2010) Jinrui Xu et al.   BIOINFORMATICS

History of biological metal utilization inferred through phylogenomic analysis of protein structures

(2010) C. L. Dupont et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Advances and pitfalls of protein structural alignment

(2009) Hitomi Hasegawa et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Structure–function relationships of anaerobic gas-processing metalloenzymes

(2009) Juan C. Fontecilla-Camps et al.   NATURE

Crystal Structure of the L Protein ofRhodobacter sphaeroidesLight-Independent Protochlorophyllide Reductase with MgADP Bound: A Homologue of the Nitrogenase Fe Protein†‡

(2008) Ranjana Sarma et al.   BIOCHEMISTRY

On distance and similarity in fold space

(2008) M. J. Sippl   BIOINFORMATICS

Statistics of Random Protein Superpositions: p-Values for Pairwise Structure Alignment

(2008) James O. Wrabl et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Data mining of metal ion environments present in protein structures

(2008) Heping Zheng et al.   JOURNAL OF INORGANIC BIOCHEMISTRY

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE