Toward a systems level view of the ECM and related proteins: A framework for the systematic definition and analysis of biological systems

Transglutaminase-2: a new endostatin partner in the extracellular matrix of endothelial cells

(2010) Clément Faye et al.   BIOCHEMICAL JOURNAL

Identification of binding partners interacting with the α1-N-propeptide of type V collagen

(2010) Sofie Symoens et al.   BIOCHEMICAL JOURNAL

Prediction of Extracellular Matrix Proteins Based on Distinctive Sequence and Domain Characteristics

(2010) Juhyun Jung et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Gene Expression in the Third Dimension: The ECM-nucleus Connection

(2010) Virginia A. Spencer et al.   JOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA

MatrixDB, the extracellular matrix interaction database

(2010) E. Chautard et al.   NUCLEIC ACIDS RESEARCH

Mice with deleted multimerin 1 and α-synuclein genes have impaired platelet adhesion and impaired thrombus formation that is corrected by multimerin 1

(2010) Adili Reheman et al.   THROMBOSIS RESEARCH

The Collagen Family

(2010) S. Ricard-Blum   Cold Spring Harbor Perspectives in Biology

MatrixDB, a database focused on extracellular protein–protein and protein–carbohydrate interactions

(2009) Emilie Chautard et al.   BIOINFORMATICS

ConceptGen: a gene set enrichment and gene set relation mapping tool

(2009) Maureen A. Sartor et al.   BIOINFORMATICS

Phenopedia and Genopedia: disease-centered and gene-centered views of the evolving knowledge of human genetic associations

(2009) W. Yu et al.   BIOINFORMATICS

Markov clustering versus affinity propagation for the partitioning of protein interaction graphs

(2009) James Vlasblom et al.   BMC BIOINFORMATICS

BioMart – biological queries made easy

(2009) Damian Smedley et al.   BMC GENOMICS

Back to basics - how the evolution of the extracellular matrix underpinned vertebrate evolution

(2009) Julie Huxley-Jones et al.   INTERNATIONAL JOURNAL OF EXPERIMENTAL PATHOLOGY

The First Draft of the Endostatin Interaction Network

(2009) Clément Faye et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Defining Elastic Fiber Interactions by Molecular Fishing

(2009) Stuart A. Cain et al.   MOLECULAR & CELLULAR PROTEOMICS

Recurated protein interaction datasets

(2009) Lukasz Salwinski et al.   NATURE METHODS

Genetic diseases of connective tissues: cellular and extracellular effects of ECM mutations

(2009) John F. Bateman et al.   NATURE REVIEWS GENETICS

The bladder extracellular matrix. Part I: architecture, development and disease

(2009) Karen J. Aitken et al.   Nature Reviews Urology

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Extracellular Matrix: Not Just Pretty Fibrils

(2009) R. O. Hynes   SCIENCE

Questioning the Ubiquity of Neofunctionalization

(2009) Todd A. Gibson et al.   PLoS Computational Biology

The bovine lactation genome: insights into the evolution of mammalian milk

(2009) Danielle G Lemay et al.   GENOME BIOLOGY

BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources

(2009) Chunlei Wu et al.   GENOME BIOLOGY

The Synergizer service for translating gene, protein and other biological identifiers

(2008) G. F. Berriz et al.   BIOINFORMATICS

AmiGO: online access to ontology and annotation data

(2008) Seth Carbon et al.   BIOINFORMATICS

TiGER: a database for tissue-specific gene expression and regulation

(2008) Xiong Liu et al.   BMC BIOINFORMATICS

Extracellular interactome of the FGF receptor-ligand system: Complexities and the relative simplicity of the worm

(2008) Urszula M. Polanska et al.   DEVELOPMENTAL DYNAMICS

Large-scale screening for novel low-affinity extracellular protein interactions

(2008) K. M. Bushell et al.   GENOME RESEARCH

DrosophilaMFAP1 Is Required for Pre-mRNA Processing and G2/M Progression

(2008) Ditte S. Andersen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Demosponge and Sea Anemone Fibrillar Collagen Diversity Reveals the Early Emergence of A/C Clades and the Maintenance of the Modular Structure of Type V/XI Collagens from Sponge to Human

(2008) Jean-Yves Exposito et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Protein Interaction Network of the Epithelial Junctional Complex: A System-Level Analysis

(2008) Luca Paris et al.   MOLECULAR BIOLOGY OF THE CELL

The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

(2008) Nicole King et al.   NATURE

Ensembl 2009

(2008) T. J. P. Hubbard et al.   NUCLEIC ACIDS RESEARCH

The GOA database in 2009--an integrated Gene Ontology Annotation resource

(2008) D. Barrell et al.   NUCLEIC ACIDS RESEARCH

The Universal Protein Resource (UniProt) 2009

(2008)   NUCLEIC ACIDS RESEARCH

Reactome knowledgebase of human biological pathways and processes

(2008) L. Matthews et al.   NUCLEIC ACIDS RESEARCH

Transcriptome-based systematic identification of extracellular matrix proteins

(2008) R.-i. Manabe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA