Raptorx: Exploiting structure information for protein alignment by statistical inference

A multiple-template approach to protein threading

(2011) Jian Peng et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Fragment-free approach to protein folding using conditional neural fields

(2010) F. Zhao et al.   BIOINFORMATICS

Low-homology protein threading

(2010) J. Peng et al.   BIOINFORMATICS

Sequencing delivers diminishing returns for homology detection: implications for mapping the protein universe

(2010) Daniel Chubb et al.   BIOINFORMATICS

Augmented training of hidden Markov models to recognize remote homologs via simulated evolution

(2009) A. Kumar et al.   BIOINFORMATICS

Computational protein design as a tool for fold recognition

(2009) Marcel Schmidt am Busch et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

PROMALS3D: a tool for multiple protein sequence and structure alignments

(2008) Jimin Pei et al.   NUCLEIC ACIDS RESEARCH

Matt: Local Flexibility Aids Protein Multiple Structure Alignment

(2008) Matthew Menke et al.   PLoS Computational Biology

MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

(2008) Sitao Wu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS