The structure of a far-red fluorescent protein, AQ143, shows evidence in support of reported red-shifting chromophore interactions

Non-invasive intravital imaging of cellular differentiation with a bright red-excitable fluorescent protein

(2014) Jun Chu et al.   NATURE METHODS

Extended Stokes Shift in Fluorescent Proteins: Chromophore–Protein Interactions in a Near-Infrared TagRFP675 Variant

(2013) Kiryl D. Piatkevich et al.   Scientific Reports

Recovery of Red Fluorescent Protein Chromophore Maturation Deficiency through Rational Design

(2012) Matthew M. Moore et al.   PLoS One

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Far-Red Fluorescent Protein Excitable with Red Lasers for Flow Cytometry and Superresolution STED Nanoscopy

(2010) Kateryna S. Morozova et al.   BIOPHYSICAL JOURNAL

Photophysics of the Red Chromophore of HcRed: Evidence for Cis−Trans Isomerization and Protonation-State Changes

(2010) Kumara Mudalige et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Chromophore Formation in DsRed Occurs by a Branched Pathway

(2010) Rita L. Strack et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Near-infrared fluorescent proteins

(2010) Dmitry Shcherbo et al.   NATURE METHODS

Identification and In Vivo Characterization of NvFP-7R, a Developmentally Regulated Red Fluorescent Protein of Nematostella vectensis

(2010) Aissam Ikmi et al.   PLoS One

Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries

(2010) R. A. Chica et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Rapidly Maturing Far-Red Derivative of DsRed-Express2 for Whole-Cell Labeling

(2009) Rita L. Strack et al.   BIOCHEMISTRY

Autofluorescent Proteins with Excitation in the Optical Window for Intravital Imaging in Mammals

(2009) Michael Z. Lin et al.   CHEMISTRY & BIOLOGY

Structural basis for red-shifted emission of a GFP-like protein from the marine copepodChiridius poppei

(2009) Kyoko Suto et al.   GENES TO CELLS

mRuby, a Bright Monomeric Red Fluorescent Protein for Labeling of Subcellular Structures

(2009) Simone Kredel et al.   PLoS One

Unique interactions between the chromophore and glutamate 16 lead to far-red emission in a red fluorescent protein

(2009) Xiaokun Shu et al.   PROTEIN SCIENCE

Optimized and Far-Red-Emitting Variants of Fluorescent Protein eqFP611

(2008) Simone Kredel et al.   CHEMISTRY & BIOLOGY

A Crystallographic Study of Bright Far-Red Fluorescent Protein mKate Reveals pH-inducedcis-transIsomerization of the Chromophore

(2008) Sergei Pletnev et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Trans−Cis Isomerization is Responsible for the Red-Shifted Fluorescence in Variants of the Red Fluorescent Protein eqFP611

(2008) Karin Nienhaus et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Diversity and Evolution of Coral Fluorescent Proteins

(2008) Naila O. Alieva et al.   PLoS One

Structural characterization of IrisFP, an optical highlighter undergoing multiple photo-induced transformations

(2008) V. Adam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA