Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato

Ectopic expression of snapdragon transcription factors facilitates the identification of genes encoding enzymes of anthocyanin decoration in tomato

(2015) Takayuki Tohge et al.   PLANT JOURNAL

EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics

(2014) Ghanasyam Rallapalli et al.   BMC GENOMICS

Engineering anthocyanin biosynthesis in plants

(2014) Yang Zhang et al.   CURRENT OPINION IN PLANT BIOLOGY

The anthocyanin reduced Tomato Mutant Demonstrates the Role of Flavonols in Tomato Lateral Root and Root Hair Development

(2014) G. S. Maloney et al.   PLANT PHYSIOLOGY

DNA-binding specificities of plant transcription factors and their potential to define target genes

(2014) José M. Franco-Zorrilla et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tomato fruits expressing a bacterial feedback-insensitive 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase of the shikimate pathway possess enhanced levels of multiple specialized metabolites and upgraded aroma

(2013) Vered Tzin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

(2013) Silin Zhong et al.   NATURE BIOTECHNOLOGY

Control limits for accumulation of plant metabolites: brute force is no substitute for understanding

(2013) Piero Morandini   PLANT BIOTECHNOLOGY JOURNAL

Co-expression ofArabidopsistranscription factor,AtMYB12, and soybean isoflavone synthase,GmIFS1, genes in tobacco leads to enhanced biosynthesis of isoflavones and flavonols resulting in osteoprotective activity

(2013) Ashutosh Pandey et al.   PLANT BIOTECHNOLOGY JOURNAL

Expression of a bacterial feedback-insensitive 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase of the shikimate pathway in Arabidopsis elucidates potential metabolic bottlenecks between primary and secondary metabolism

(2012) Vered Tzin et al.   NEW PHYTOLOGIST

A Genome-Wide Regulatory Framework Identifies Maize Pericarp Color1 Controlled Genes

(2012) K. Morohashi et al.   PLANT CELL

Alteration of the Interconversion of Pyruvate and Malate in the Plastid or Cytosol of Ripening Tomato Fruit Invokes Diverse Consequences on Sugar But Similar Effects on Cellular Organic Acid, Metabolism, and Transitory Starch Accumulation

(2012) S. Osorio et al.   PLANT PHYSIOLOGY

Transcriptional control of metabolic fluxes

(2011) J. Nielsen   Molecular Systems Biology

A Polycomb-based switch underlying quantitative epigenetic memory

(2011) Andrew Angel et al.   NATURE

Malate Plays a Crucial Role in Starch Metabolism, Ripening, and Soluble Solid Content of Tomato Fruit and Affects Postharvest Softening

(2011) Danilo C. Centeno et al.   PLANT CELL

Over-expression of a grape stilbene synthase gene in tomato induces parthenocarpy and causes abnormal pollen development

(2011) Ilaria Ingrosso et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Modulation of Transcriptome and Metabolome of Tobacco by Arabidopsis Transcription Factor, AtMYB12, Leads to Insect Resistance

(2010) P. Misra et al.   PLANT PHYSIOLOGY

Sampling the Solution Space in Genome-Scale Metabolic Networks Reveals Transcriptional Regulation in Key Enzymes

(2010) Sergio Bordel et al.   PLoS Computational Biology

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Antisense inhibition of enolase strongly limits the metabolism of aromatic amino acids, but has only minor effects on respiration in leaves of transgenic tobacco plants

(2009) Lars M. Voll et al.   NEW PHYTOLOGIST

Biochemical and Molecular Analysis of Pink Tomatoes: Deregulated Expression of the Gene Encoding Transcription Factor SlMYB12 Leads to Pink Tomato Fruit Color

(2009) A.-R. Ballester et al.   PLANT PHYSIOLOGY

Fruit-Surface Flavonoid Accumulation in Tomato Is Controlled by a SlMYB12-Regulated Transcriptional Network

(2009) Avital Adato et al.   PLoS Genetics

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Noncoding Transcription by RNA Polymerase Pol IVb/Pol V Mediates Transcriptional Silencing of Overlapping and Adjacent Genes

(2008) Andrzej T. Wierzbicki et al.   CELL

Accumulation of Isoflavone Genistin in Transgenic Tomato Plants Overexpressing a Soybean Isoflavone Synthase Gene

(2008) Chun-Hat Shih et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Quantitative analysis of short-chain acyl-coenzymeAs in plant tissues by LC–MS–MS electrospray ionization method

(2008) M. Ann D.N. Perera et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors

(2008) Eugenio Butelli et al.   NATURE BIOTECHNOLOGY

AtMYB12 regulates caffeoyl quinic acid and flavonol synthesis in tomato: expression in fruit results in very high levels of both types of polyphenol

(2008) Jie Luo et al.   PLANT JOURNAL

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY