Multiple markers and multiple individuals refine true seal phylogeny and bring molecules and morphology back in line

STEM: species tree estimation using maximum likelihood for gene trees under coalescence

(2009) Laura S. Kubatko et al.   BIOINFORMATICS

The monophyletic origin of sea lions and fur seals (Carnivora; Otariidae) in the Southern Hemisphere

(2009) Takahiro Yonezawa et al.   GENE

Pinniped phylogenetic relationships inferred using AFLP markers

(2009) K K Dasmahapatra et al.   HEREDITY

Gene tree discordance, phylogenetic inference and the multispecies coalescent

(2009) James H. Degnan et al.   TRENDS IN ECOLOGY & EVOLUTION

BEST: Bayesian estimation of species trees under the coalescent model

(2008) L. Liu   BIOINFORMATICS

Comparison of Species Tree Methods for Reconstructing the Phylogeny of Bearded Manakins (Aves: Pipridae, Manacus) from Multilocus Sequence Data

(2008) Robb T. Brumfield et al.   SYSTEMATIC BIOLOGY

Combined analysis of fourteen nuclear genes refines the Ursidae phylogeny

(2007) Marie Pagès et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION