Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen

Rapid Phenotypic and Genotypic Diversification After Exposure to the Oral Host Niche inCandida albicans

(2018) Anja Forche et al.   GENETICS

Rapid Phenotypic and Genotypic Diversification After Exposure to the Oral Host Niche inCandida albicans

(2018) Anja Forche et al.   GENETICS

Genome Dynamics of Hybrid Saccharomyces cerevisiae During Vegetative and Meiotic Divisions

(2017) Abhishek Dutta et al.   G3-Genes Genomes Genetics

Adaptive Mistranslation Accelerates the Evolution of Fluconazole Resistance and Induces Major Genomic and Gene Expression Alterations in Candida albicans

(2017) Tobias Weil et al.   mSphere

Heterozygote Advantage Is a Common Outcome of Adaptation in Saccharomyces cerevisiae

(2016) D. Sellis et al.   GENETICS

Sex speeds adaptation by altering the dynamics of molecular evolution

(2016) Michael J. McDonald et al.   NATURE

Microevolutionary traits and comparative population genomics of the emerging pathogenic fungusCryptococcus gattii

(2016) Rhys A. Farrer et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Clonal Strain Persistence of Candida albicans Isolates from Chronic Mucocutaneous Candidiasis Patients

(2016) Alexander J. Moorhouse et al.   PLoS One

Analysis of Repair Mechanisms following an Induced Double-Strand Break Uncovers Recessive Deleterious Alleles in the Candida albicans Diploid Genome

(2016) Adeline Feri et al.   mBio

Candida albicans repetitive elements display epigenetic diversity and plasticity

(2016) Verónica Freire-Benéitez et al.   Scientific Reports

Loss of heterozygosity: what is it good for?

(2015) Georgina L. Ryland et al.   BMC Medical Genomics

Genomic investigations of evolutionary dynamics and epistasis in microbial evolution experiments

(2015) Elizabeth R Jerison et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

The Spontaneous Mutation Rate in the Fission YeastSchizosaccharomyces pombe

(2015) Ashley Farlow et al.   GENETICS

Real-Time Evolution of a Subtelomeric Gene Family in Candida albicans

(2015) Matthew Z. Anderson et al.   GENETICS

High mutational rates of large-scale duplication and deletion inDaphnia pulex

(2015) Nathan Keith et al.   GENOME RESEARCH

Error-Prone Repair of DNA Double-Strand Breaks

(2015) Kasey Rodgers et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Parent–progeny sequencing indicates higher mutation rates in heterozygotes

(2015) Sihai Yang et al.   NATURE

Invasive Candidiasis

(2015) Bart Jan Kullberg et al.   NEW ENGLAND JOURNAL OF MEDICINE

Crossovers are associated with mutation and biased gene conversion at recombination hotspots

(2015) Barbara Arbeithuber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolution of drug resistance in clinical isolates of Candida albicans

(2015) Christopher B Ford et al.   eLife

Distinct stages during colonization of the mouse gastrointestinal tract by Candida albicans

(2015) Daniel Prieto et al.   Frontiers in Microbiology

The Spontaneous Mutation Rate in the Fission YeastSchizosaccharomyces pombe

(2015) Ashley Farlow et al.   GENETICS

Real-Time Evolution of a Subtelomeric Gene Family in Candida albicans

(2015) Matthew Z. Anderson et al.   GENETICS

Comparative Genomics of Saccharomyces cerevisiae Natural Isolates for Bioenergy Production

(2014) Dana J. Wohlbach et al.   Genome Biology and Evolution

Environmentally responsive genome-wide accumulation of de novoArabidopsis thalianamutations and epimutations

(2014) Caifu Jiang et al.   GENOME RESEARCH

Genetic and phenotypic intra-species variation inCandida albicans

(2014) Matthew P. Hirakawa et al.   GENOME RESEARCH

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Precise estimates of mutation rate and spectrum in yeast

(2014) Y. O. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

(2014) S. K. Gire et al.   SCIENCE

Rapid Mechanisms for Generating Genome Diversity: Whole Ploidy Shifts, Aneuploidy, and Loss of Heterozygosity

(2014) R. J. Bennett et al.   Cold Spring Harbor Perspectives in Medicine

Parasexuality and Ploidy Change in Candida tropicalis

(2013) Riyad N. H. Seervai et al.   EUKARYOTIC CELL

Shuttle vectors for facile gap repair cloning and integration into a neutral locus in Candida albicans

(2013) Maryam Gerami-Nejad et al.   MICROBIOLOGY-SGM

Passage through the mammalian gut triggers a phenotypic switch that promotes Candida albicans commensalism

(2013) Kalyan Pande et al.   NATURE GENETICS

Ploidy variation as an adaptive mechanism in human pathogenic fungi

(2013) Carl A. Morrow et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The Yeast Environmental Stress Response Regulates Mutagenesis Induced by Proteotoxic Stress

(2013) Erika Shor et al.   PLoS Genetics

Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure

(2013) Dale Muzzey et al.   GENOME BIOLOGY

Mutations Arising During Repair of Chromosome Breaks

(2012) Anna Malkova et al.   Annual Review of Genetics

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Estimating the human mutation rate using autozygosity in a founder population

(2012) Catarina D Campbell et al.   NATURE GENETICS

Hidden Killers: Human Fungal Infections

(2012) G. D. Brown et al.   Science Translational Medicine

High-Frequency Genetic Contents Variations in Clinical Candida albicans Isolates

(2011) Feng Yang et al.   BIOLOGICAL & PHARMACEUTICAL BULLETIN

Evidence for a high mutation rate at rapidly evolving yeast centromeres

(2011) Douda Bensasson   BMC EVOLUTIONARY BIOLOGY

An Iron Homeostasis Regulatory Circuit with Reciprocal Roles in Candida albicans Commensalism and Pathogenesis

(2011) Changbin Chen et al.   Cell Host & Microbe

Stress-Induced Loss of Heterozygosity in Candida: a Possible Missing Link in the Ability to Evolve

(2011) S. M. Rosenberg   mBio

Stress Alters Rates and Types of Loss of Heterozygosity in Candida albicans

(2011) A. Forche et al.   mBio

Break-Induced Replication Is Highly Inaccurate

(2011) Angela Deem et al.   PLOS BIOLOGY

Genomic evidence of repeat-induced point mutation (RIP) in filamentous ascomycetes

(2010) A. John Clutterbuck   FUNGAL GENETICS AND BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Baker's Yeast Diploid Genome Is Remarkably Stable in Vegetative Growth and Meiosis

(2010) K. T. Nishant et al.   PLoS Genetics

Emergence and Pathogenicity of Highly Virulent Cryptococcus gattii Genotypes in the Northwest United States

(2010) Edmond J. Byrnes et al.   PLoS Pathogens

Heterozygosity and mutation rate: evidence for an interaction and its implications

(2009) William Amos   BIOESSAYS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Property Differences among the Four MajorCandida albicansStrain Clades

(2009) Donna M. MacCallum et al.   EUKARYOTIC CELL

Widespread occurrence of chromosomal aneuploidy following the routine production ofCandida albicansmutants

(2009) Mélanie Arbour et al.   FEMS YEAST RESEARCH

The enigma of the major repeat sequence ofCandida albicans

(2009) Hiroji Chibana et al.   Future Microbiology

Evolution in Candida albicans Populations During a Single Passage Through a Mouse Host

(2009) A. Forche et al.   GENETICS

Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

(2009) P. D. Keightley et al.   GENOME RESEARCH

The Polymerase   Translesion Synthesis DNA Polymerase Acts Independently of the Mismatch Repair System To Limit Mutagenesis Caused by 7,8-Dihydro-8-Oxoguanine in Yeast

(2009) S. V. Mudrak et al.   MOLECULAR AND CELLULAR BIOLOGY

Indel-Associated Mutation Rate Varies with Mating System in Flowering Plants

(2009) J. D. Hollister et al.   MOLECULAR BIOLOGY AND EVOLUTION

Loss of heterozygosity in commensal isolates of the asexual diploid yeast Candida albicans

(2008) Dorothée Diogo et al.   FUNGAL GENETICS AND BIOLOGY

Discovering the secrets of theCandida albicansagglutinin-like sequence (ALS) gene family – a sticky pursuit

(2008) Lois L. Hoyer et al.   MEDICAL MYCOLOGY

Mutations in the multi-drug resistance regulatorMRR1, followed by loss of heterozygosity, are the main cause ofMDR1overexpression in fluconazole-resistantCandida albicansstrains

(2008) Nico Dunkel et al.   MOLECULAR MICROBIOLOGY

An isochromosome confers drug resistance in vivo by amplification of two genes, ERG11 and TAC1

(2008) Anna Selmecki et al.   MOLECULAR MICROBIOLOGY

High-resolution mapping of meiotic crossovers and non-crossovers in yeast

(2008) Eugenio Mancera et al.   NATURE

Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes

(2008) Dacheng Tian et al.   NATURE

A genome-wide view of the spectrum of spontaneous mutations in yeast

(2008) M. Lynch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Catalog of Neutral and Deleterious Polymorphism in Yeast

(2008) Scott W. Doniger et al.   PLoS Genetics

Hypermutability of Damaged Single-Strand DNA Formed at Double-Strand Breaks and Uncapped Telomeres in Yeast Saccharomyces cerevisiae

(2008) Yong Yang et al.   PLoS Genetics