Proteogenomic analysis and global discovery of posttranslational modifications in prokaryotes

A draft map of the human proteome

(2014) Min-Sik Kim et al.   NATURE

Mass-spectrometry-based draft of the human proteome

(2014) Mathias Wilhelm et al.   NATURE

How many signal peptides are there in bacteria?

(2013) Dmitry N. Ivankov et al.   ENVIRONMENTAL MICROBIOLOGY

Systematic Analyses of the Transcriptome, Translatome, and Proteome Provide a Global View and Potential Strategy for the C-HPP

(2013) Cheng Chang et al.   JOURNAL OF PROTEOME RESEARCH

Proteogenomic Analysis of Human Colon Carcinoma Cell Lines LIM1215, LIM1899, and LIM2405

(2013) Susan Fanayan et al.   JOURNAL OF PROTEOME RESEARCH

Global Phosphoproteomic Analysis Reveals Diverse Functions of Serine/Threonine/Tyrosine Phosphorylation in the Model Cyanobacterium Synechococcus sp. Strain PCC 7002

(2013) Ming-kun Yang et al.   JOURNAL OF PROTEOME RESEARCH

Beyond gene expression: The impact of protein post-translational modifications in bacteria

(2013) Joel A. Cain et al.   Journal of Proteomics

Status of Large-scale Analysis of Post-translational Modifications by Mass Spectrometry

(2013) Jesper V. Olsen et al.   MOLECULAR & CELLULAR PROTEOMICS

Variation and genetic control of protein abundance in humans

(2013) Linfeng Wu et al.   NATURE

HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics

(2013) Rui M M Branca et al.   NATURE METHODS

Heterologous Stop Codon Readthrough of Metazoan Readthrough Candidates in Yeast

(2013) Clara S. Chan et al.   PLoS One

Bioengineering of carbon fixation, biofuels, and biochemicals in cyanobacteria and plants

(2012) Lisa Rosgaard et al.   JOURNAL OF BIOTECHNOLOGY

A Proteogenomic Survey of theMedicago truncatulaGenome

(2012) Jeremy D. Volkening et al.   MOLECULAR & CELLULAR PROTEOMICS

From cyanobacteria to plants: conservation of PII functions during plastid evolution

(2012) Vasuki Ranjani Chellamuthu et al.   PLANTA

Acclimation of the Global Transcriptome of the Cyanobacterium Synechococcus sp. Strain PCC 7002 to Nutrient Limitations and Different Nitrogen Sources

(2012) Marcus Ludwig et al.   Frontiers in Microbiology

Cyanobacteria and microalgae: A positive prospect for biofuels

(2011) Asha Parmar et al.   BIORESOURCE TECHNOLOGY

Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium

(2011) Charles Ansong et al.   BMC GENOMICS

Identification of 67 Histone Marks and Histone Lysine Crotonylation as a New Type of Histone Modification

(2011) Minjia Tan et al.   CELL

A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry

(2011) R. Chaerkady et al.   GENOME RESEARCH

Evidence of abundant stop codon readthrough in Drosophila and other metazoa

(2011) I. Jungreis et al.   GENOME RESEARCH

Fast Multi-blind Modification Search through Tandem Mass Spectrometry

(2011) Seungjin Na et al.   MOLECULAR & CELLULAR PROTEOMICS

Deep proteome and transcriptome mapping of a human cancer cell line

(2011) N. Nagaraj et al.   Molecular Systems Biology

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Solar hydrogen-producing bionanodevice outperforms natural photosynthesis

(2011) C. E. Lubner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Tricarboxylic Acid Cycle in Cyanobacteria

(2011) S. Zhang et al.   SCIENCE

Transcription Profiling of the Model Cyanobacterium Synechococcus sp. Strain PCC 7002 by Next-Gen (SOLiD™) Sequencing of cDNA

(2011) Marcus Ludwig et al.   Frontiers in Microbiology

Proteogenomics and systems biology: quest for the ultimate missing parts

(2010) Jean Armengaud   Expert Review of Proteomics

Identification of lysine succinylation as a new post-translational modification

(2010) Zhihong Zhang et al.   Nature Chemical Biology

Proteogenomics

(2010) Santosh Renuse et al.   PROTEOMICS

High-coverage proteome analysis reveals the first insight of protein modification systems in the pathogenic spirochete Leptospira interrogans

(2009) Xing-Jun Cao et al.   CELL RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Unrestricted identification of modified proteins using MS/MS

(2009) Erik Ahrné et al.   PROTEOMICS

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY