4.8 Article

Direct measurement of the dielectric polarization properties of DNA

出版社

NATL ACAD SCIENCES
DOI: 10.1073/pnas.1405702111

关键词

DNA-ligand binding; DNA packaging; atomic force microscopy; atomistic simulations; Poisson-Boltzmann equation

资金

  1. Spanish Ministerio de Educacion y Ciencia [TEC2010-16844, BIO2012-32868, BFU2011-29038-C02-1]
  2. Comunidad de Madrid [S-2009/MAT-1507]
  3. advanced European Research Council Grant (SimDNA)

向作者/读者索取更多资源

The electric polarizability of DNA, represented by the dielectric constant, is a key intrinsic property that modulates DNA interaction with effector proteins. Surprisingly, it has so far remained unknown owing to the lack of experimental tools able to access it. Here, we experimentally resolved it by detecting the ultraweak polarization forces of DNA inside single T7 bacteriophages particles using electrostatic force microscopy. In contrast to the common assumption of low-polarizable behavior like proteins (epsilon(r) similar to 2-4), we found that the DNA dielectric constant is similar to 8, considerably higher than the value of similar to 3 found for capsid proteins. State-of-the-art molecular dynamic simulations confirm the experimental findings, which result in sensibly decreased DNA interaction free energy than normally predicted by Poisson-Boltzmann methods. Our findings reveal a property at the basis of DNA structure and functions that is needed for realistic theoretical descriptions, and illustrate the synergetic power of scanning probe microscopy and theoretical computation techniques.

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