Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication

Population Genomics Reveal Recent Speciation and Rapid Evolutionary Adaptation in Polar Bears

(2014) Shiping Liu et al.   CELL

The "Domestication Syndrome" in Mammals: A Unified Explanation Based on Neural Crest Cell Behavior and Genetics

(2014) A. S. Wilkins et al.   GENETICS

Endogenous Retrovirus Insertion in the KIT Oncogene Determines White and White spotting in Domestic Cats

(2014) Victor A. David et al.   G3-Genes Genomes Genetics

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

(2013) Mira V. Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

Development of SNP markers identifying European wildcats, domestic cats, and their admixed progeny

(2013) B. Nussberger et al.   Molecular Ecology Resources

The genomic signature of dog domestication reveals adaptation to a starch-rich diet

(2013) Erik Axelsson et al.   NATURE

WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013

(2013) Jing Wang et al.   NUCLEIC ACIDS RESEARCH

Extent of Linkage Disequilibrium in the Domestic Cat, Felis silvestris catus, and Its Breeds

(2013) Hasan Alhaddad et al.   PLoS One

Earliest evidence for commensal processes of cat domestication

(2013) Y. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pleiotropic effects of coat colour-associated mutations in humans, mice and other mammals

(2013) Monika Reissmann et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The tiger genome and comparative analysis with lion and snow leopard genomes

(2013) Yun Sung Cho et al.   Nature Communications

DCC Expression by Neurons Regulates Synaptic Plasticity in the Adult Brain

(2013) Katherine E. Horn et al.   Cell Reports

Variation of cats under domestication: genetic assignment of domestic cats to breeds and worldwide random-bred populations

(2012) J. D. Kurushima et al.   ANIMAL GENETICS

Clinical Characteristics of a Large Choroideremia Pedigree Carrying a Novel CHM Mutation

(2012) Alex S. Huang et al.   ARCHIVES OF OPHTHALMOLOGY

Mechanism of Two Novel Human GJC3 Missense Mutations in Causing Non-Syndromic Hearing Loss

(2012) Ching-Chyuan Su et al.   CELL BIOCHEMISTRY AND BIOPHYSICS

A High-Resolution 15,000Rad Radiation Hybrid Panel for the Domestic Cat

(2012) L.H. Bach et al.   CYTOGENETIC AND GENOME RESEARCH

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Epigenetic regulation of the neuroblastoma genes, Arid3b and Mycn

(2012) K Kobayashi et al.   ONCOGENE

Inner Ear Morphology Is Perturbed in Two Novel Mouse Models of Recessive Deafness

(2012) Kerry A. Miller et al.   PLoS One

Predicting the Functional Effect of Amino Acid Substitutions and Indels

(2012) Yongwook Choi et al.   PLoS One

Strong signatures of selection in the domestic pig genome

(2012) C.-J. Rubin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutations in MITF and PAX3 Cause “Splashed White” and Other White Spotting Phenotypes in Horses

(2012) Regula Hauswirth et al.   PLoS Genetics

Genome-Wide Association Study Identifies Novel Loci Associated with Circulating Phospho- and Sphingolipid Concentrations

(2012) Ayşe Demirkan et al.   PLoS Genetics

Effects of increases in dietary fat intake on plasma lipid and lipoprotein cholesterol concentrations and associated enzyme activities in cats

(2011) Richard F. Butterwick et al.   AMERICAN JOURNAL OF VETERINARY RESEARCH

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

Identification of ACOX2 as a shared genetic risk factor for preeclampsia and cardiovascular disease

(2011) Åsa Johansson et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

WikiPathways: building research communities on biological pathways

(2011) T. Kelder et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2012

(2011) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Cargo recognition mechanism of myosin X revealed by the structure of its tail MyTH4-FERM tandem in complex with the DCC P3 domain

(2011) Zhiyi Wei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Abolition of the behavioral phenotype of adult netrin-1 receptor deficient mice by exposure to amphetamine during the juvenile period

(2011) Leora Yetnikoff et al.   PSYCHOPHARMACOLOGY

Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification

(2011) R. W. Meredith et al.   SCIENCE

Parallelization of the MAFFT multiple sequence alignment program

(2010) Kazutaka Katoh et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Light whole genome sequence for SNP discovery across domestic cat breeds

(2010) James C Mullikin et al.   BMC GENOMICS

Accelerated Evolution of CES7, a Gene Encoding a Novel Major Urinary Protein in the Cat Family

(2010) G. Li et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

Pathway Commons, a web resource for biological pathway data

(2010) E. G. Cerami et al.   NUCLEIC ACIDS RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Myosin-X is required for cranial neural crest cell migration inXenopus laevis

(2009) Yoo-Seok Hwang et al.   DEVELOPMENTAL DYNAMICS

From wild animals to domestic pets, an evolutionary view of domestication

(2009) C. A. Driscoll et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Aggressive assembly of pyrosequencing reads with mates

(2008) Jason R. Miller et al.   BIOINFORMATICS

Down-regulation of protocadherin-α A isoforms in mice changes contextual fear conditioning and spatial working memory

(2008) Emi Fukuda et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

An autosomal genetic linkage map of the domestic cat, Felis silvestris catus

(2008) Marilyn Menotti-Raymond et al.   GENOMICS

Genome analysis of the platypus reveals unique signatures of evolution

(2008) Wesley C. Warren et al.   NATURE

Patterns of molecular genetic variation among cat breeds

(2007) Marilyn Menotti-Raymond et al.   GENOMICS