Loss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculations
出版年份 2014 全文链接
标题
Loss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculations
作者
关键词
-
出版物
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 111, Issue 43, Pages 15396-15401
出版商
Proceedings of the National Academy of Sciences
发表日期
2014-10-14
DOI
10.1073/pnas.1407768111
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Assessing the accuracy of physical models used in protein-folding simulations: quantitative evidence from long molecular dynamics simulations
- (2014) Stefano Piana et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Correlation as a Determinant of Configurational Entropy in Supramolecular and Protein Systems
- (2014) Andrew T. Fenley et al. JOURNAL OF PHYSICAL CHEMISTRY B
- How force unfolding differs from chemical denaturation
- (2014) Guillaume Stirnemann et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The new view of hydrophobic free energy
- (2013) Robert L. Baldwin FEBS LETTERS
- Conformational Entropies and Order Parameters: Convergence, Reproducibility, and Transferability
- (2013) Samuel Genheden et al. Journal of Chemical Theory and Computation
- Efficient Determination of Protein–Protein Standard Binding Free Energies from First Principles
- (2013) James C. Gumbart et al. Journal of Chemical Theory and Computation
- Microscopic Insights into the NMR Relaxation-Based Protein Conformational Entropy Meter
- (2013) Vignesh Kasinath et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Atomic-level description of ubiquitin folding
- (2013) S. Piana et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The dark energy of proteins comes to light: conformational entropy and its role in protein function revealed by NMR relaxation
- (2012) A Joshua Wand CURRENT OPINION IN STRUCTURAL BIOLOGY
- PPM: a side-chain and backbone chemical shift predictor for the assessment of protein conformational ensembles
- (2012) Da-Wei Li et al. JOURNAL OF BIOMOLECULAR NMR
- Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
- (2012) Robert B. Best et al. Journal of Chemical Theory and Computation
- The Folding Transition State of Protein L Is Extensive with Nonnative Interactions (and Not Small and Polarized)
- (2012) Tae Yeon Yoo et al. JOURNAL OF MOLECULAR BIOLOGY
- Efficient Calculation of Molecular Configurational Entropies Using an Information Theoretic Approximation
- (2012) Bracken M. King et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Context and Force Field Dependence of the Loss of Protein Backbone Entropy upon Folding Using Realistic Denatured and Native State Ensembles
- (2012) Michael C. Baxa et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Protein activity regulation by conformational entropy
- (2012) Shiou-Ru Tzeng et al. NATURE
- Protein Vivisection Reveals Elusive Intermediates in Folding
- (2010) Zhongzhou Zheng et al. JOURNAL OF MOLECULAR BIOLOGY
- Entropy Localization in Proteins
- (2010) Da-Wei Li et al. JOURNAL OF PHYSICAL CHEMISTRY B
- The role of conformational entropy in molecular recognition by calmodulin
- (2010) Michael S Marlow et al. Nature Chemical Biology
- On the entropy of protein folding
- (2010) George I. Makhatadze et al. PROTEIN SCIENCE
- 15N backbone dynamics of the S-peptide from ribonuclease A in its free and S-protein bound forms: Toward a site-specific analysis of entropy changes upon folding
- (2010) Andrei T. Alexandrescu et al. PROTEIN SCIENCE
- Neighbor-Dependent Ramachandran Probability Distributions of Amino Acids Developed from a Hierarchical Dirichlet Process Model
- (2010) Daniel Ting et al. PLoS Computational Biology
- Calculation of Proteins’ Total Side-Chain Torsional Entropy and Its Influence on Protein–Ligand Interactions
- (2009) Kateri H. DuBay et al. JOURNAL OF MOLECULAR BIOLOGY
- A Dictionary for Protein Side-Chain Entropies from NMR Order Parameters
- (2009) Da-Wei Li et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Microsecond Molecular Dynamics Simulation Shows Effect of Slow Loop Dynamics on Backbone Amide Order Parameters of Proteins†
- (2008) Paul Maragakis et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Protein Side-Chain Dynamics and Residual Conformational Entropy
- (2008) Nikola Trbovic et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- The origins of asymmetry in the folding transition states of protein L and protein G
- (2002) John Karanicolas et al. PROTEIN SCIENCE
- Side-chain conformational entropy at protein-protein interfaces
- (2002) Christian Cole et al. PROTEIN SCIENCE
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started