Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins

Genome-wide analysis of functional sirtuin chromatin targets in yeast

(2013) Mingguang Li et al.   GENOME BIOLOGY

Systematic evaluation of factors influencing ChIP-seq fidelity

(2012) Yiwen Chen et al.   NATURE METHODS

ChIP–seq and beyond: new and improved methodologies to detect and characterize protein–DNA interactions

(2012) Terrence S. Furey   NATURE REVIEWS GENETICS

Dynamics of Sir3 spreading in budding yeast: secondary recruitment sites and euchromatic localization

(2011) Marta Radman-Livaja et al.   EMBO JOURNAL

ChIP-Seq: technical considerations for obtaining high-quality data

(2011) Benjamin L Kidder et al.   NATURE IMMUNOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Co-Evolution of Transcriptional Silencing Proteins and the DNA Elements Specifying Their Assembly

(2010) Oliver A. Zill et al.   PLOS BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing

(2009) Philippe Lefrançois et al.   BMC GENOMICS

ChIP–seq: advantages and challenges of a maturing technology

(2009) Peter J. Park   NATURE REVIEWS GENETICS

Where Does Mediator Bind In Vivo?

(2009) Xiaochun Fan et al.   PLoS One

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH