Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli

Evolution of a Pathogen: A Comparative Genomics Analysis Identifies a Genetic Pathway to Pathogenesis in Acinetobacter

(2013) Jason W. Sahl et al.   PLoS One

Draft Genome Sequences of the Diarrheagenic Escherichia coli Collection

(2012) T. H. Hazen et al.   JOURNAL OF BACTERIOLOGY

Escherichia coli Serotype O55:H7 Diversity Supports Parallel Acquisition of Bacteriophage at Shiga Toxin Phage Insertion Sites during Evolution of the O157:H7 Lineage

(2012) J. L. Kyle et al.   JOURNAL OF BACTERIOLOGY

Multicenter Evaluation of a Sequence-Based Protocol for Subtyping Shiga Toxins and Standardizing Stx Nomenclature

(2012) F. Scheutz et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity

(2011) Jason W Sahl et al.   BMC GENOMICS

Enteropathogenic Escherichia coli infection in children

(2011) Theresa J. Ochoa et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Draft Genome Sequences of Six Escherichia coli Isolates from the Stepwise Model of Emergence of Escherichia coli O157:H7

(2011) L. V. Rump et al.   JOURNAL OF BACTERIOLOGY

Characterisation of the Escherichia coli strain associated with an outbreak of haemolytic uraemic syndrome in Germany, 2011: a microbiological study

(2011) Martina Bielaszewska et al.   LANCET INFECTIOUS DISEASES

Enteropathogenic and enterohaemorrhagic Escherichia coli: even more subversive elements

(2011) Alexander R. C. Wong et al.   MOLECULAR MICROBIOLOGY

Origins of theE. coliStrain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany

(2011) David A. Rasko et al.   NEW ENGLAND JOURNAL OF MEDICINE

Open-Source Genomic Analysis of Shiga-Toxin–ProducingE. coliO104:H4

(2011) Holger Rohde et al.   NEW ENGLAND JOURNAL OF MEDICINE

Genomic anatomy of Escherichia coli O157:H7 outbreaks

(2011) M. Eppinger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mugsy: fast multiple alignment of closely related whole genomes

(2010) Samuel V. Angiuoli et al.   BIOINFORMATICS

A Comparative Genomic Analysis of Diverse Clonal Types of EnterotoxigenicEscherichia coliReveals Pathovar-Specific Conservation

(2010) Jason W. Sahl et al.   INFECTION AND IMMUNITY

The population genetics of commensal Escherichia coli

(2010) Olivier Tenaillon et al.   NATURE REVIEWS MICROBIOLOGY

Derivation of Escherichia coli O157:H7 from Its O55:H7 Precursor

(2010) Zhemin Zhou et al.   PLoS One

Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources?

(2009) Frédéric Boyer et al.   BMC GENOMICS

Characterisation of atypical enteropathogenic E. coli strains of clinical origin

(2009) Sharon M Tennant et al.   BMC MICROBIOLOGY

An overview of atypical enteropathogenicEscherichia coli

(2009) Rodrigo T. Hernandes et al.   FEMS MICROBIOLOGY LETTERS

Analysis of the Genome of the Escherichia coli O157:H7 2006 Spinach-Associated Outbreak Isolate Indicates Candidate Genes That May Enhance Virulence

(2009) B. R. Kulasekara et al.   INFECTION AND IMMUNITY

Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli

(2009) Y. Ogura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains

(2008) Françoise Jaureguy et al.   BMC GENOMICS

Shiga Toxin–Negative Attaching and EffacingEscherichia coli:Distinct Clinical Associations with Bacterial Phylogeny and Virulence Traits and Inferred In‐Host Pathogen Evolution

(2008) Martina Bielaszewska et al.   CLINICAL INFECTIOUS DISEASES

Systematic Identification and Sequence Analysis of the Genomic Islands of the Enteropathogenic Escherichia coli Strain B171-8 by the Combined Use of Whole-Genome PCR Scanning and Fosmid Mapping

(2008) Y. Ogura et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence and Comparative Genome Analysis of Enteropathogenic Escherichia coli O127:H6 Strain E2348/69

(2008) A. Iguchi et al.   JOURNAL OF BACTERIOLOGY

The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates

(2008) D. A. Rasko et al.   JOURNAL OF BACTERIOLOGY

Identification and Functional Characterization of Gene Components of Type VI Secretion System in Bacterial Genomes

(2008) Sakshi Shrivastava et al.   PLoS One

Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks

(2008) S. D. Manning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA