Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter

Marked host specificity and lack of phylogeographic population structure ofCampylobacter jejuniin wild birds

(2013) Petra Griekspoor et al.   MOLECULAR ECOLOGY

Passage of Campylobacter jejuni through the chicken reservoir or mice promotes phase variation in contingency genes Cj0045 and Cj0170 that strongly associates with colonization and disease in a mouse model

(2012) J.-S. Kim et al.   MICROBIOLOGY-SGM

Progressive genome-wide introgression in agriculturalCampylobacter coli

(2012) Samuel K. Sheppard et al.   MOLECULAR ECOLOGY

BIGSdb: Scalable analysis of bacterial genome variation at the population level

(2011) Keith A Jolley et al.   BMC BIOINFORMATICS

Niche segregation and genetic structure of Campylobacter jejuni populations from wild and agricultural host species

(2011) SAMUEL K. SHEPPARD et al.   MOLECULAR ECOLOGY

Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs)

(2011) G. E. Sims et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene regulation mediates host specificity of a bacterial pathogen

(2011) Nabil Killiny et al.   Environmental Microbiology Reports

Evolutionary Dynamics of Complete Campylobacter Pan-Genomes and the Bacterial Species Concept

(2010) Tristan Lefébure et al.   Genome Biology and Evolution

Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls

(2010)   NATURE

Conditions for the Evolution of Gene Clusters in Bacterial Genomes

(2010) Sara Ballouz et al.   PLoS Computational Biology

 -Lactamase-Mediated  -Lactam Resistance in Campylobacter Species: Prevalence of Cj0299 (blaOXA-61) and Evidence for a Novel  -Lactamase in C. jejuni

(2009) D. J. Griggs et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions

(2009) Gregory E. Sims et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNAPlotter: circular and linear interactive genome visualization

(2008) T. Carver et al.   BIOINFORMATICS

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

(2008) S. Kumar et al.   BRIEFINGS IN BIOINFORMATICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH