Prediction and experimental validation of enzyme substrate specificity in protein structures
出版年份 2013 全文链接
标题
Prediction and experimental validation of enzyme substrate specificity in protein structures
作者
关键词
-
出版物
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 110, Issue 45, Pages E4195-E4202
出版商
Proceedings of the National Academy of Sciences
发表日期
2013-10-22
DOI
10.1073/pnas.1305162110
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- The use of evolutionary patterns in protein annotation
- (2012) Angela D. Wilkins et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- SMpred: A Support Vector Machine Approach to Identify Structural Motifs in Protein Structure Without Using Evolutionary Information
- (2012) Ganesan Pugalenthi et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- PSC: protein surface classification
- (2012) Y. Y. Tseng et al. NUCLEIC ACIDS RESEARCH
- COFACTOR: an accurate comparative algorithm for structure-based protein function annotation
- (2012) Ambrish Roy et al. NUCLEIC ACIDS RESEARCH
- Protein function prediction: towards integration of similarity metrics
- (2011) Serkan Erdin et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Using Multiple Microenvironments to Find Similar Ligand-Binding Sites: Application to Kinase Inhibitor Binding
- (2011) Tianyun Liu et al. PLoS Computational Biology
- Separation of Recombination and SOS Response in Escherichia coli RecA Suggests LexA Interaction Sites
- (2011) Anbu K. Adikesavan et al. PLoS Genetics
- Structural investigation ofmyo-inositol dehydrogenase fromBacillus subtilis: implications for catalytic mechanism and inositol dehydrogenase subfamily classification
- (2010) Karin E. van Straaten et al. BIOCHEMICAL JOURNAL
- An Angiotensin II type 1 receptor activation switch patch revealed through Evolutionary Trace analysis
- (2010) Marie Mi Bonde et al. BIOCHEMICAL PHARMACOLOGY
- CMASA: an accurate algorithm for detecting local protein structural similarity and its application to enzyme catalytic site annotation
- (2010) Gong-Hua Li et al. BMC BIOINFORMATICS
- Accurate Protein Structure Annotation through Competitive Diffusion of Enzymatic Functions over a Network of Local Evolutionary Similarities
- (2010) Eric Venner et al. PLoS One
- Evolution-guided discovery and recoding of allosteric pathway specificity determinants in psychoactive bioamine receptors
- (2010) Gustavo J. Rodriguez et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Derivation of 3D coordinate templates for searching structural databases: Application to ser-His-Asp catalytic triads in the serine proteinases and lipases
- (2010) Andrew C. Wallace et al. PROTEIN SCIENCE
- Understanding the Functional Roles of Amino Acid Residues in Enzyme Catalysis
- (2009) Gemma L. Holliday et al. JOURNAL OF MOLECULAR BIOLOGY
- Predicting Protein Function and Binding Profile via Matching of Local Evolutionary and Geometric Surface Patterns
- (2009) Yan Yuan Tseng et al. JOURNAL OF MOLECULAR BIOLOGY
- Evolutionary Trace Annotation of Protein Function in the Structural Proteome
- (2009) Serkan Erdin et al. JOURNAL OF MOLECULAR BIOLOGY
- Structural relationships among proteins with different global topologies and their implications for function annotation strategies
- (2009) D. Petrey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Tess: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites
- (2009) Andrew C. Wallace et al. PROTEIN SCIENCE
- On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins
- (2009) Abdullah Kahraman et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Protein function prediction – the power of multiplicity
- (2009) Robert Rentzsch et al. TRENDS IN BIOTECHNOLOGY
- FLORA: A Novel Method to Predict Protein Function from Structure in Diverse Superfamilies
- (2009) Oliver C. Redfern et al. PLoS Computational Biology
- FINDSITELHM: A Threading-Based Approach to Ligand Homology Modeling
- (2009) Michal Brylinski et al. PLoS Computational Biology
- Protein function annotation by homology-based inference
- (2009) Yaniv Loewenstein et al. GENOME BIOLOGY
- Prediction of enzyme function based on 3D templates of evolutionarily important amino acids
- (2008) David M Kristensen et al. BMC BIOINFORMATICS
- Cloning and characterization of thermostable esterase from Archaeoglobus fulgidus
- (2008) Seung-Bum Kim et al. JOURNAL OF MICROBIOLOGY
- Domain-Based and Family-Specific Sequence Identity Thresholds Increase the Levels of Reliable Protein Function Transfer
- (2008) Sarah Addou et al. JOURNAL OF MOLECULAR BIOLOGY
- De-Orphaning the Structural Proteome through Reciprocal Comparison of Evolutionarily Important Structural Features
- (2008) R. Matthew Ward et al. PLoS One
- Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments
- (2008) L. Xie et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-wide enzyme annotation with precision control: Catalytic families (CatFam) databases
- (2008) Chenggang Yu et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Discovery of a Dipeptide Epimerase Enzymatic Function Guided by Homology Modeling and Virtual Screening
- (2008) Chakrapani Kalyanaraman et al. STRUCTURE
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