4.8 Article

Structural evolution of p53, p63, and p73: Implication for heterotetramer formation

出版社

NATL ACAD SCIENCES
DOI: 10.1073/pnas.0905867106

关键词

crystallography; mass spectrometry; tetramer; transcription factor

资金

  1. Medical Research Council
  2. European Community
  3. Medical Research Council [MC_U105474168] Funding Source: researchfish
  4. MRC [MC_U105474168] Funding Source: UKRI

向作者/读者索取更多资源

Oligomerization of members of the p53 family of transcription factors (p53, p63, and p73) is essential for their distinct functions in cell-cycle control and development. To elucidate the molecular basis for tetramer formation of the various family members, we solved the crystal structure of the human p73 tetramerization domain (residues 351-399). Similarly to the canonical p53 tetramer, p73 forms a tetramer with D-2 symmetry that can be described as a dimer of dimers. The most striking difference between the p53 and p73 tetramerization domain is the presence of an additional C-terminal helix in p73. This helix, which is conserved in p63, is essential for stabilizing the overall architecture of the tetramer, as evidenced by the different oligomeric structures observed for a shortened variant lacking this helix. The helices act as clamps, wrapping around the neighboring dimer and holding it in place. In addition, we show by mass spectrometry that the tetramerization domains of p63 and p73, but not p53, fully exchange, with different mixed tetramers present at equilibrium, albeit at a relatively slow rate. Taken together, these data provide intriguing insights into the divergent evolution of the oligomerization domain within the p53 family, from the ancestral p63/p73-like protein toward smaller, less promiscuous monomeric building blocks in human p53, allowing functional separation of the p53 pathway from that of its family members.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.8
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Multidisciplinary Sciences

Peptidoglycan biosynthesis is driven by lipid transfer along enzyme-substrate affinity gradients

Abraham O. Oluwole, Robin A. Corey, Chelsea M. Brown, Victor M. Hernandez-Rocamora, Phillip J. Stansfeld, Waldemar Vollmer, Jani R. Bolla, Carol Robinson

Summary: The use of native mass spectrometry revealed the effects of lipid substrates on PG membrane enzymes and demonstrated that the passage of substrates and products in the pathway is controlled by their relative binding affinities.

NATURE COMMUNICATIONS (2022)

Article Biochemistry & Molecular Biology

Structural basis of DNA packaging by a ring-type ATPase from an archetypal viral system

Herman K. H. Fung, Shelley Grimes, Alexis Huet, Robert L. Duda, Maria Chechik, Joseph Gault, Carol Robinson, Roger W. Hendrix, Paul J. Jardine, James F. Conway, Christoph G. Baumann, Alfred A. Antson

Summary: Many cellular processes rely on substrate rotation or translocation by a multi-subunit, ring-type NTPase. Researchers have reconstituted a cos packaging system and provided a detailed description of its biochemical and structural properties, revealing similarities and differences in its mechanism and regulation.

NUCLEIC ACIDS RESEARCH (2022)

Article Pharmacology & Pharmacy

Kinetic analysis of endogenous β2-adrenoceptor-mediated cAMP GloSensor™ responses in HEK293 cells

Sean A. Cullum, Dmitry B. Veprintsev, Stephen J. Hill

Summary: This study analysed the kinetic phases of cAMP responses to beta(2)-adrenoceptor agonists in HEK293 cells expressing low levels of endogenous beta(2)-adrenoceptor. It was found that partial agonists had reduced relative IRmax values compared to isoprenaline. Preincubation with beta(2)-adrenoceptor antagonists led to a decrease in the peak response and exacerbated the effect on IRmax values. These findings provide insights into the hemi-equilibria in low receptor reserve systems with agonist-antagonist interactions.

BRITISH JOURNAL OF PHARMACOLOGY (2023)

Article Chemistry, Multidisciplinary

Connecting single-nucleotide polymorphisms, glycosylation status, and interactions of plasma serine protease inhibitors

Di Wu, Manman Guo, Carol V. Robinson

Summary: Understanding the impact of genetic variations and post-translational modifications on protein interactions is made possible by using native mass spectrometry (MS). In this study, we characterized the proteoforms of plasma serine protease inhibitors and found that different fucosylation linkages have opposing effects on protein interactions.
Article Chemistry, Multidisciplinary

Uncovering the Role of N-Glycan Occupancy on the Cooperative Assembly of Spike and Angiotensin Converting Enzyme 2 Complexes: Insights from Glycoengineering and Native Mass Spectrometry

Tarick J. El-Baba, Corinne A. Lutomski, Sean A. Burnap, Jani R. Bolla, Lindsay A. Baker, Andrew J. Baldwin, Weston B. Struwe, Carol V. Robinson

Summary: In this study, the impact of glycans on mediating ACE2 dimerization and interactions with Spike was investigated. The researchers found that glycans play a regulatory role in ACE2 dimerization and that positive cooperativity drives ACE2 to complex with multiple Spike trimers. These findings are important for developing strategies to neutralize the virus.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2023)

Correction Biochemistry & Molecular Biology

Structure, mechanism and lipid-mediated remodeling of the mammalian Na+/H+ exchanger NHA2 (vol 29, pg 108, 2022)

Rei Matsuoka, Roman Fudim, Sukkyeong Jung, Chenou Zhang, Andre Bazzone, Yurie Chatzikyriakidou, Carol V. Robinson, Norimichi Nomura, So Iwata, Michael Landreh, Laura Orellana, Oliver Beckstein, David Drew

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2023)

Review Pharmacology & Pharmacy

G Protein-Coupled Receptor Pharmacology-Insights from Mass Spectrometry

Hsin-Yung Yen, Ali Jazayeri, Carol Robinson

Summary: GPCRs are important drug targets due to their involvement in physiological processes. Mass spectrometry techniques, such as HDX-MS and native-MS, provide opportunities to investigate GPCR pharmacology and discover new drugs. This review highlights the potential of MS techniques for in-depth investigations of GPCR biology.

PHARMACOLOGICAL REVIEWS (2023)

Article Multidisciplinary Sciences

Cellular production of a de novo membrane cytochrome

Benjamin J. Hardy, Alvaro Martin Hermosilla, Dinesh K. Chinthapalli, Carol V. Robinson, J. L. Ross Anderson, Paul Curnow

Summary: In this study, a minimal diheme membrane cytochrome was computationally designed and produced in live bacteria. The synthetic construct mimics a four-helix bundle found in respiratory complexes and has no sequence homology to natural polypeptides. This artificial membrane metalloprotein has the potential to function as an electron transfer module in both synthetic protocells and living systems.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2023)

Article Multidisciplinary Sciences

An in-solution snapshot of SARS-COV-2 main protease maturation process and inhibition

Gabriela Dias Noske, Yun Song, Rafaela Sachetto Fernandes, Rod Chalk, Haitem Elmassoudi, Lizbe Koekemoer, C. David J. Owen, Tarick V. El-Baba, Carol Robinson, Glaucius Oliva, Andre Schutzer Godoy

Summary: The main protease of SARS-CoV-2, M-pro, is responsible for cleaving the viral polyprotein and is crucial for enzyme dimerization and activity. N-terminal cleavage is not critical for dimerization, and different types of inhibitors can affect the oligomeric states. This study provides insights into the maturation process of M-pro and how it can be targeted by inhibitors.

NATURE COMMUNICATIONS (2023)

Article Biochemistry & Molecular Biology

Structural insights into a regulatory mechanism of FIR RRM1-FUSE interaction

Xiaomin Ni, Andreas C. Joerger, Apirat Chaikuad, Stefan Knapp

Summary: FUBP-interacting repressor (FIR) is a suppressor of the proto-oncogene MYC's transcription, by binding to the far upstream element (FUSE) of the MYC promoter. Competition with FUSE-binding protein 1 (FUBP1) is a crucial mechanism for MYC transcriptional regulation.

OPEN BIOLOGY (2023)

Article Biochemical Research Methods

Structure-Reactivity Studies of 2-Sulfonylpyrimidines Allow Selective Protein Arylation

Maeva M. Pichon, Dawid Drelinkiewicz, David Lozano, Ruxandra Moraru, Laura J. Hayward, Megan Jones, Michael A. Mccoy, Samuel Allstrum-Graves, Dimitrios-Ilias Balourdas, Andreas C. Joerger, Richard J. Whitby, Stephen M. Goldup, Neil Wells, Graham J. Langley, Julie M. Herniman, Matthias G. J. Baud

Summary: Protein arylation using 2-sulfonylpyrimidines as covalent warheads for selective and metal-free cysteine S-arylation was evaluated. The reaction resulted in stable S-heteroarylated adducts at neutral pH. Fine-tuning of the heterocyclic core and exocyclic leaving group allowed predictable reactivity, covering >9 orders of magnitude. This study provides a comprehensive structure-reactivity relationship on heteroaryl sulfones and highlights 2-sulfonylpyrimidine as a synthetically tractable and protein compatible covalent motif for targeting reactive cysteines.

BIOCONJUGATE CHEMISTRY (2023)

Article Biochemical Research Methods

ProSight Native: Defining Protein Complex Composition from Native Top-Down Mass Spectrometry Data

Kenneth R. R. Durbin, Matthew T. T. Robey, Lilien N. N. Voong, Ryan T. T. Fellers, Corinne A. A. Lutomski, Tarick J. J. El-Baba, Carol V. V. Robinson, Neil L. L. Kelleher

Summary: Native mass spectrometry has become an important technique for determining the composition of protein complexes. However, there is a lack of software tools for comprehensive analysis of native mass spectrometry data. In this study, we introduce ProSight Native as an informatics platform that can determine the complete composition of protein complexes. We demonstrated its features by successfully determining the composition of a homotetrameric membrane complex and a heterodimer complex with associated ligands.

JOURNAL OF PROTEOME RESEARCH (2023)

Article Chemistry, Multidisciplinary

Platform Reagents Enable Synthesis of Ligand-Directed Covalent Probes: Study of Cannabinoid Receptor 2 in Live Cells

Miroslav Kosar, David A. Sykes, Alexander E. G. Viray, Rosa Maria Vitale, Roman C. Sarott, Rudolf L. Ganzoni, David Onion, Janelle M. Tobias, Philipp Leippe, Christoph Ullmer, Elisabeth A. Zirwes, Wolfgang Guba, Uwe Grether, James A. Frank, Dmitry B. Veprintsev, Erick M. Carreira

Summary: The study presents a novel ligand-directed covalent labeling strategy for visualizing and studying CB2R, a promising target for the treatment of neuroinflammatory disorders. The selective covalent labeling of CB2R was achieved using fluorogenic probes, and the probes were successfully applied to visualize CB2R in live cells.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2023)

Article Multidisciplinary Sciences

Structural basis of telomeric nucleosome recognition by shelterin factor TRF1

Hongmiao Hu, Anne-Marie M. van Roon, George E. Ghanim, Bilal Ahsan, Abraham O. Oluwole, Sew-Yeu Peak-Chew, Carol V. Robinson, Thi Hoang Duong Nguyen

Summary: Shelterin and nucleosomes interact at mammalian telomeres, but the mechanism is not yet understood. Cryo-electron microscopy was used to study the structure of a human telomeric nucleosome bound to the shelterin factor TRF1. The study revealed that TRF1 binds to unwrapped nucleosomal DNA ends by engaging both the DNA and the histone octamer, resulting in a shift in the nucleosomal DNA. Phosphorylation of TRF1 and a noncanonical DNA binding surface on TRF1 were found to be crucial for its association with telomeric nucleosomes. These findings provide important insights into shelterin-chromatin interactions and its roles at telomeres.

SCIENCE ADVANCES (2023)

Article Multidisciplinary Sciences

Structure snapshots reveal the mechanism of a bacterial membrane lipoprotein N-acyltransferase

Luke Smithers, Oksana Degtjarik, Dietmar Weichert, Chia-Ying Huang, Coilin Boland, Katherine Bowen, Abraham Oluwole, Corinne Lutomski, Carol V. Robinson, Eoin M. Scanlan, Meitian Wang, Vincent Olieric, Moran Shalev-Benami, Martin Caffrey

Summary: This study investigates the structural changes of the enzyme apolipoprotein N-acyltransferase (Lnt) during its reaction. The study confirms the ping-pong mechanism of Lnt and explains the molecular basis for its ability to bind different substrates.

SCIENCE ADVANCES (2023)

暂无数据