Differential DNA methylation and transcription profiles in date palm roots exposed to salinity

Screening of Date Palm (Phoenix dactylifera L.) Cultivars for Salinity Tolerance

(2017) Latifa Al Kharusi et al.   Forests

Editorial: Epigenetic Modifications Associated with Abiotic and Biotic Stresses in Plants: An Implication for Understanding Plant Evolution

(2017) Mahmoud W. Yaish   Frontiers in Plant Science

The Role of Na+ and K+ Transporters in Salt Stress Adaptation in Glycophytes

(2017) Dekoum V. M. Assaha et al.   Frontiers in Physiology

Non-CG Methylation in the Human Genome

(2015) Yupeng He et al.   Annual Review of Genomics and Human Genetics

Promoter methylation regulates the abundance of osa-miR393a in contrasting rice genotypes under salinity stress

(2015) Showkat Ahmad Ganie et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing

(2015) Mark A Urich et al.   Nature Protocols

Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements

(2015) David Secco et al.   eLife

Proteomics, metabolomics, and ionomics perspectives of salinity tolerance in halophytes

(2015) Asha Kumari et al.   Frontiers in Plant Science

Salt tolerance research in date palm tree (Phoenix dactylifera L.), past, present, and future perspectives

(2015) Mahmoud W. Yaish et al.   Frontiers in Plant Science

A genome-wide identification of the miRNAome in response to salinity stress in date palm (Phoenix dactylifera L.)

(2015) Mahmoud W. Yaish et al.   Frontiers in Plant Science

Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing

(2014) Michael J Ziller et al.   NATURE METHODS

Detection of Oxidation Products of 5-Methyl-2′-Deoxycytidine in Arabidopsis DNA

(2014) Shuo Liu et al.   PLoS One

Divergence of Gene Body DNA Methylation and Evolution of Plant Duplicate Genes

(2014) Jun Wang et al.   PLoS One

Effects of high salinity irrigation on growth, gas-exchange, and photoprotection in date palms (Phoenix dactylifera L., cv. Medjool)

(2013) Or Sperling et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods

(2013) M. Stevens et al.   GENOME RESEARCH

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

(2013) Hume Stroud et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

High-throughput sequencing of cytosine methylation in plant DNA

(2013) Thomas J Hardcastle   Plant Methods

DNA methylome analysis using short bisulfite sequencing data

(2012) Felix Krueger et al.   NATURE METHODS

DNA Methylation in Plants: Relationship to Small RNAs and Histone Modifications, and Functions in Transposon Inactivation

(2012) H. Saze et al.   PLANT AND CELL PHYSIOLOGY

Salt Stress Induced Variation in DNA Methylation Pattern and Its Influence on Gene Expression in Contrasting Rice Genotypes

(2012) Ratna Karan et al.   PLoS One

Pseudogenes: Newly Discovered Players in Human Cancer

(2012) L. Poliseno   Science Signaling

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

The role of epigenetic processes in controlling flowering time in plants exposed to stress

(2011) M. W. Yaish et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mechanisms of Plant Salt Response: Insights from Proteomics

(2011) Heng Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Tet Proteins Can Convert 5-Methylcytosine to 5-Formylcytosine and 5-Carboxylcytosine

(2011) S. Ito et al.   SCIENCE

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Transgenerational Adaptation of Arabidopsis to Stress Requires DNA Methylation and the Function of Dicer-Like Proteins

(2010) Alex Boyko et al.   PLoS One

The Complete Chloroplast Genome Sequence of Date Palm (Phoenix dactylifera L.)

(2010) Meng Yang et al.   PLoS One

Local DNA hypomethylation activates genes in rice endosperm

(2010) A. Zemach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conservation and divergence of methylation patterning in plants and animals

(2010) S. Feng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human DNA methylomes at base resolution show widespread epigenomic differences

(2009) Ryan Lister et al.   NATURE

AtMBD9 modulates Arabidopsis development through the dual epigenetic pathways of DNA methylation and histone acetylation

(2009) Mahmoud W. F. Yaish et al.   PLANT JOURNAL

OsMSRA4.1 and OsMSRB1.1, two rice plastidial methionine sulfoxide reductases, are involved in abiotic stress responses

(2009) Xiaoli Guo et al.   PLANTA

Transgenerational Epigenetic Inheritance: Prevalence, Mechanisms, and Implications for the Study of Heredity and Evolution

(2009) Eva Jablonka et al.   QUARTERLY REVIEW OF BIOLOGY

Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1

(2009) M. Tahiliani et al.   SCIENCE

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

(2008) Ryan Lister et al.   CELL

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

(2008) Shawn J. Cokus et al.   NATURE

DNA methylation landscapes: provocative insights from epigenomics

(2008) Miho M. Suzuki et al.   NATURE REVIEWS GENETICS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Contrasting Responses of Photosynthesis to Salt Stress in the Glycophyte Arabidopsis and the Halophyte Thellungiella: Role of the Plastid Terminal Oxidase as an Alternative Electron Sink

(2008) P. Stepien et al.   PLANT PHYSIOLOGY

Proteomic analysis on a high salt tolerance introgression strain ofTriticum aestivum/Thinopyrum ponticum

(2008) Meng-Cheng Wang et al.   PROTEOMICS