Genome sequences of lower Great Lakes Microcystis sp. reveal strain-specific genes that are present and expressed in western Lake Erie blooms
出版年份 2017 全文链接
标题
Genome sequences of lower Great Lakes Microcystis sp. reveal strain-specific genes that are present and expressed in western Lake Erie blooms
作者
关键词
Comparative genomics, Lakes, Metagenomics, Phylogenetics, Genomic databases, Genome analysis, Phylogenetic analysis, Phylogeography
出版物
PLoS One
Volume 12, Issue 10, Pages e0183859
出版商
Public Library of Science (PLoS)
发表日期
2017-10-12
DOI
10.1371/journal.pone.0183859
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Cyanobacterial harmful algal blooms are a biological disturbance to Western Lake Erie bacterial communities
- (2017) Michelle A. Berry et al. ENVIRONMENTAL MICROBIOLOGY
- A review of the global ecology, genomics, and biogeography of the toxic cyanobacterium, Microcystis spp.
- (2016) Matthew J. Harke et al. HARMFUL ALGAE
- The dual role of nitrogen supply in controlling the growth and toxicity of cyanobacterial blooms
- (2016) Christopher J. Gobler et al. HARMFUL ALGAE
- The common bloom-forming cyanobacterium Microcystis is prone to a wide array of microbial antagonists
- (2016) Jeroen Van Wichelen et al. HARMFUL ALGAE
- Global solutions to regional problems: Collecting global expertise to address the problem of harmful cyanobacterial blooms. A Lake Erie case study
- (2016) George S. Bullerjahn et al. HARMFUL ALGAE
- How rising CO 2 and global warming may stimulate harmful cyanobacterial blooms
- (2016) Petra M. Visser et al. HARMFUL ALGAE
- The re-eutrophication of Lake Erie: Harmful algal blooms and hypoxia
- (2016) Susan B. Watson et al. HARMFUL ALGAE
- IMG/M: integrated genome and metagenome comparative data analysis system
- (2016) I-Min A. Chen et al. NUCLEIC ACIDS RESEARCH
- Comparative genomics reveals diversified CRISPR-Cas systems of globally distributed Microcystis aeruginosa, a freshwater bloom-forming cyanobacterium
- (2015) Chen Yang et al. Frontiers in Microbiology
- The composition of the global and feature specific cyanobacterial core-genomes
- (2015) Stefan Simm et al. Frontiers in Microbiology
- Integrating phylogeny, geographic niche partitioning and secondary metabolite synthesis in bloom-forming Planktothrix
- (2014) Rainer Kurmayer et al. ISME Journal
- Status, causes and controls of cyanobacterial blooms in Lake Erie
- (2014) Morgan M. Steffen et al. JOURNAL OF GREAT LAKES RESEARCH
- Phylogenies of Microcystin-Producing Cyanobacteria in the Lower Laurentian Great Lakes Suggest Extensive Genetic Connectivity
- (2014) Timothy W. Davis et al. PLoS One
- CRISPR-Induced Distributed Immunity in Microbial Populations
- (2014) Lauren M. Childs et al. PLoS One
- Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus
- (2014) N. Kashtan et al. SCIENCE
- Nitrogen availability increases the toxin quota of a harmful cyanobacterium, Microcystis aeruginosa
- (2014) Geoffrey P. Horst et al. WATER RESEARCH
- PhyloSift: phylogenetic analysis of genomes and metagenomes
- (2014) Aaron E. Darling et al. PeerJ
- GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis
- (2013) Bruno Contreras-Moreira et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Genetic diversity of inorganic carbon uptake systems causes variation in CO2 response of the cyanobacterium Microcystis
- (2013) Giovanni Sandrini et al. ISME Journal
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- IMG/M 4 version of the integrated metagenome comparative analysis system
- (2013) Victor M. Markowitz et al. NUCLEIC ACIDS RESEARCH
- The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
- (2013) Pelin Yilmaz et al. NUCLEIC ACIDS RESEARCH
- CRISPR-Cas Systems in the Cyanobacterium Synechocystis sp. PCC6803 Exhibit Distinct Processing Pathways Involving at Least Two Cas6 and a Cmr2 Protein
- (2013) Ingeborg Scholz et al. PLoS One
- Global Transcriptional Responses of the Toxic Cyanobacterium, Microcystis aeruginosa, to Nitrogen Stress, Phosphorus Stress, and Growth on Organic Matter
- (2013) Matthew J. Harke et al. PLoS One
- A Tribute to Disorder in the Genome of the Bloom-Forming Freshwater Cyanobacterium Microcystis aeruginosa
- (2013) Jean-François Humbert et al. PLoS One
- Horizontal gene transfer and the evolution of bacterial and archaeal population structure
- (2013) Martin F. Polz et al. TRENDS IN GENETICS
- Intricate Interactions between the Bloom-Forming Cyanobacterium Microcystis aeruginosa and Foreign Genetic Elements, Revealed by Diversified Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Signatures
- (2012) Sotaro Kuno et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
- (2012) Y. Peng et al. BIOINFORMATICS
- Spatiotemporal Patterns and Ecophysiology of Toxigenic Microcystis Blooms in Lake Taihu, China: Implications for Water Quality Management
- (2012) T. G. Otten et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- A novel method for tracking western Lake Erie Microcystis blooms, 2002–2011
- (2012) Thomas B. Bridgeman et al. JOURNAL OF GREAT LAKES RESEARCH
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Interannual Variability of Cyanobacterial Blooms in Lake Erie
- (2012) Richard P. Stumpf et al. PLoS One
- The rise of harmful cyanobacteria blooms: The potential roles of eutrophication and climate change
- (2011) J.M. O’Neil et al. HARMFUL ALGAE
- Molecular Response of the Bloom-Forming Cyanobacterium, Microcystis aeruginosa, to Phosphorus Limitation
- (2011) Matthew J. Harke et al. MICROBIAL ECOLOGY
- Genomic island variability facilitates Prochlorococcus–virus coexistence
- (2011) Sarit Avrani et al. NATURE
- Local Expansion of a Panmictic Lineage of Water Bloom-Forming Cyanobacterium Microcystis aeruginosa
- (2011) Yuuhiko Tanabe et al. PLoS One
- Lack of Phylogeographic Structure in the Freshwater Cyanobacterium Microcystis aeruginosa Suggests Global Dispersal
- (2011) Ineke van Gremberghe et al. PLoS One
- Effects of nitrogenous compounds and phosphorus on the growth of toxic and non-toxic strains of Microcystis during cyanobacterial blooms
- (2010) TW Davis et al. AQUATIC MICROBIAL ECOLOGY
- Genome-wide comparison of cyanobacterial transposable elements, potential genetic diversity indicators
- (2010) Shen Lin et al. GENE
- Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans
- (2010) Rex R Malmstrom et al. ISME Journal
- Assessment of Microcystis growth rate potential and nutrient status across a trophic gradient in western Lake Erie
- (2010) Justin D. Chaffin et al. JOURNAL OF GREAT LAKES RESEARCH
- Highly Toxic Microcystis aeruginosa Strain, Isolated from São Paulo—Brazil, Produce Hepatotoxins and Paralytic Shellfish Poison Neurotoxins
- (2010) Célia L. Sant′Anna et al. NEUROTOXICITY RESEARCH
- Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities
- (2010) V. J. Denef et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- IMG ER: a system for microbial genome annotation expert review and curation
- (2009) Victor M. Markowitz et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- The effects of temperature and nutrients on the growth and dynamics of toxic and non-toxic strains of Microcystis during cyanobacteria blooms
- (2009) Timothy W. Davis et al. HARMFUL ALGAE
- Ecological Genomics of Marine Picocyanobacteria
- (2009) D. J. Scanlan et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Community-wide analysis of microbial genome sequence signatures
- (2009) Gregory J Dick et al. GENOME BIOLOGY
- Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium
- (2008) Lionel Frangeul et al. BMC GENOMICS
- Taxonomic resolution, ecotypes and the biogeography ofProchlorococcus
- (2008) Adam C. Martiny et al. ENVIRONMENTAL MICROBIOLOGY
- Eutrophication of U.S. Freshwaters: Analysis of Potential Economic Damages
- (2008) Walter K. Dodds et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Spatiotemporal changes in the genetic diversity of a bloom-forming Microcystis aeruginosa (cyanobacteria) population
- (2008) Enora Briand et al. ISME Journal
- Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton
- (2008) D. E. Hunt et al. SCIENCE
- CLIMATE: Blooms Like It Hot
- (2008) H. W. Paerl et al. SCIENCE
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