Modeling of annexin A2—Membrane interactions by molecular dynamics simulations

Increased Binding of Calcium Ions at Positively Curved Phospholipid Membranes

(2017) Aniket Magarkar et al.   Journal of Physical Chemistry Letters

Calcium and Zinc Differentially Affect the Structure of Lipid Membranes

(2017) Norbert Kučerka et al.   LANGMUIR

Cations induce shape remodeling of negatively charged phospholipid membranes

(2017) Z. T. Graber et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Annexins A2 and A8 in endothelial cell exocytosis and the control of vascular homeostasis

(2016) Volker Gerke   BIOLOGICAL CHEMISTRY

Binding Site Recognition and Docking Dynamics of a Single Electron Transport Protein: Cytochrome c2

(2016) Abhishek Singharoy et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Hydration Dynamics of a Peripheral Membrane Protein

(2016) Olivier Fisette et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

High-speed atomic force microscopy shows that annexin V stabilizes membranes on the second timescale

(2016) Atsushi Miyagi et al.   Nature Nanotechnology

The complex nature of calcium cation interactions with phospholipid bilayers

(2016) Adéla Melcrová et al.   Scientific Reports

ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers

(2014) B. G. Pierce et al.   BIOINFORMATICS

CHARMM-GUIMembrane Buildertoward realistic biological membrane simulations

(2014) Emilia L. Wu et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Molecular dynamic studies on the impact of mutations on the structure, stability, and N-terminal orientation of annexin A1: Implications for membrane aggregation

(2014) Bradley Simpkins et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The N-terminal of annexin A1 as a secondary membrane binding site: A molecular dynamics study

(2014) Matthew P. Donohue et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

(2013) Sander Pronk et al.   BIOINFORMATICS

Lipid Segregation and Membrane Budding Induced by the Peripheral Membrane Binding Protein Annexin A2

(2013) Patrick Drücker et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

DOT2: Macromolecular docking with improved biophysical models

(2013) Victoria A. Roberts et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

CHARMM36 all-atom additive protein force field: Validation based on comparison to NMR data

(2013) Jing Huang et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Characterizing the binding of annexin V to a lipid bilayer using molecular dynamics simulations

(2013) Zhuxi Chen et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Monte Carlo Simulation of Protein-Induced Lipid Demixing in a Membrane with Interactions Derived from Experiment

(2011) Paulo F. Almeida et al.   BIOPHYSICAL JOURNAL

Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types

(2010) Jeffery B. Klauda et al.   JOURNAL OF PHYSICAL CHEMISTRY B

CHARMM: The biomolecular simulation program

(2009) B. R. Brooks et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

CHARMM-GUI: A web-based graphical user interface for CHARMM

(2008) Sunhwan Jo et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Molecular dynamics simulation studies on Ca2+-induced conformational changes of annexin I

(2008) R. D. Shesham et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Insight into the location and dynamics of the annexin A2 N-terminal domain during Ca 2+ -induced membrane bridging

(2007) Jesus Ayala-Sanmartin et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES