Metrics for comparing neuronal tree shapes based on persistent homology

Persistent homology analysis of brain artery trees

(2016) Paul Bendich et al.   Annals of Applied Statistics

NBLAST: Rapid, Sensitive Comparison of Neuronal Structure and Construction of Neuron Family Databases

(2016) Marta Costa et al.   NEURON

Topological characterization of neuronal arbor morphology via sequence representation: II - global alignment

(2015) Todd A Gillette et al.   BMC BIOINFORMATICS

Reconstruction and Simulation of Neocortical Microcircuitry

(2015) Henry Markram et al.   CELL

BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies

(2015) Yinan Wan et al.   NEUROINFORMATICS

Towards the automatic classification of neurons

(2015) Rubén Armañanzas et al.   TRENDS IN NEUROSCIENCES

Quantitative Arbor Analytics: Unsupervised Harmonic Co-Clustering of Populations of Brain Cell Arbors Based on L-Measure

(2014) Yanbin Lu et al.   NEUROINFORMATICS

From Curves to Trees: A Tree-like Shapes Distance Using the Elastic Shape Analysis Framework

(2014) A. Mottini et al.   NEUROINFORMATICS

Mature Purkinje Cells Require the Retinoic Acid-Related Orphan Receptor-  (ROR ) to Maintain Climbing Fiber Mono-Innervation and Other Adult Characteristics

(2013) X. R. Chen et al.   JOURNAL OF NEUROSCIENCE

A visual motion detection circuit suggested by Drosophila connectomics

(2013) Shin-ya Takemura et al.   NATURE

New insights into the classification and nomenclature of cortical GABAergic interneurons

(2013) Javier DeFelipe et al.   NATURE REVIEWS NEUROSCIENCE

Three-dimensional tracking and analysis of ion channel signals across dendritic arbors

(2013) Melanie Ginger et al.   Frontiers in Neural Circuits

Classification of neocortical interneurons using affinity propagation

(2013) Roberto Santana et al.   Frontiers in Neural Circuits

Digital Morphometry of Rat Cerebellar Climbing Fibers Reveals Distinct Branch and Bouton Types

(2012) K. M. Brown et al.   JOURNAL OF NEUROSCIENCE

Morphological Homogeneity of Neurons: Searching for Outlier Neuronal Cells

(2012) Krissia Zawadzki et al.   NEUROINFORMATICS

The DIADEM Metric: Comparing Multiple Reconstructions of the Same Neuron

(2011) Todd A. Gillette et al.   NEUROINFORMATICS

Three-Dimensional Reconstruction of Brain-wide Wiring Networks in Drosophila at Single-Cell Resolution

(2010) Ann-Shyn Chiang et al.   CURRENT BIOLOGY

Comparison between supervised and unsupervised classifications of neuronal cell types: A case study

(2010) Luis Guerra et al.   Developmental Neurobiology

Topology and data

(2009) Gunnar Carlsson   BULLETIN OF THE AMERICAN MATHEMATICAL SOCIETY

Quantitative morphometry of electrophysiologically identified CA3b interneurons reveals robust local geometry and distinct cell classes

(2009) Giorgio A. Ascoli et al.   JOURNAL OF COMPARATIVE NEUROLOGY

On Comparing Neuronal Morphologies with the Constrained Tree-edit-distance

(2009) Todd A. Gillette et al.   NEUROINFORMATICS

The Tree-Edit-Distance, a Measure for Quantifying Neuronal Morphology

(2009) Holger Heumann et al.   NEUROINFORMATICS

L-Measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies

(2008) Ruggero Scorcioni et al.   Nature Protocols