EnHERV: Enrichment analysis of specific human endogenous retrovirus patterns and their neighboring genes

Isolation and cultivation of naive-like human pluripotent stem cells based on HERVH expression

(2016) Jichang Wang et al.   Nature Protocols

Regulatory activities of transposable elements: from conflicts to benefits

(2016) Edward B. Chuong et al.   NATURE REVIEWS GENETICS

Contribution of type W human endogenous retroviruses to the human genome: characterization of HERV-W proviral insertions and processed pseudogenes

(2016) Nicole Grandi et al.   Retrovirology

Endogenous retroviral promoter exaptation in human cancer

(2016) Artem Babaian et al.   Mobile DNA

Restricting retrotransposons: a review

(2016) John L. Goodier   Mobile DNA

Expression of Long Interspersed Nuclear Element 1 Retroelements and Induction of Type I Interferon in Patients With Systemic Autoimmune Disease

(2016) Clio P. Mavragani et al.   Arthritis & Rheumatology

Differential expression analysis of human endogenous retroviruses based on ENCODE RNA-seq data

(2015) Kerstin Haase et al.   BMC Medical Genomics

Molecular functions of human endogenous retroviruses in health and disease

(2015) Maria Suntsova et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Transposable Elements and DNA Methylation Create in Embryonic Stem Cells Human-Specific Regulatory Sequences Associated with Distal Enhancers and Noncoding RNAs

(2015) Gennadi V. Glinsky   Genome Biology and Evolution

DNA methylation modulates HERV-E expression in CD4+ T cells from systemic lupus erythematosus patients

(2015) Zhouwei Wu et al.   JOURNAL OF DERMATOLOGICAL SCIENCE

Patterns and functional roles of LINE-1 and Alu methylation in the keratinocyte from patients with psoriasis vulgaris

(2015) Surasak Yooyongsatit et al.   JOURNAL OF HUMAN GENETICS

Epitopes of HERV-Wenv induce antigen-specific humoral immunity in multiple sclerosis patients

(2015) Giuseppe Mameli et al.   JOURNAL OF NEUROIMMUNOLOGY

Human Endogenous Retrovirus Group E and Its Involvement in Diseases

(2015) Christelle Le Dantec et al.   Viruses-Basel

HERV-K(HML-2) rec and np9 transcripts not restricted to disease but present in many normal human tissues

(2015) Katja Schmitt et al.   Mobile DNA

Activation of the Long Terminal Repeat of Human Endogenous Retrovirus K by Melanoma-Specific Transcription Factor MITF-M

(2015) Iyoko Katoh et al.   NEOPLASIA

Human endogenous retrovirus expression is inversely related with the up-regulation of interferon-inducible genes in the skin of patients with lichen planus

(2014) Marcelle Almeida de Sousa Nogueira et al.   ARCHIVES OF DERMATOLOGICAL RESEARCH

Types of DNA methylation status of the interspersed repetitive sequences for LINE-1, Alu, HERV-E and HERV-K in the neutrophils from systemic lupus erythematosus patients and healthy controls

(2014) Patadon Sukapan et al.   JOURNAL OF HUMAN GENETICS

Critical role of DNA methylation in the pathogenesis of systemic lupus erythematosus: new advances and future challenges

(2014) C-G Miao et al.   LUPUS

The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity

(2014) Xinyi Lu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma

(2014) F. E. Lock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs

(2014) R. Johnson et al.   RNA

DNA methylation of human endogenous retrovirus in systemic lupus erythematosus

(2013) Jeerawat Nakkuntod et al.   JOURNAL OF HUMAN GENETICS

RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts

(2013) Sarah Geisler et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs

(2013) Aurélie Kapusta et al.   PLoS Genetics

Genome-Wide DNA Methylation Analysis of Systemic Lupus Erythematosus Reveals Persistent Hypomethylation of Interferon Genes and Compositional Changes to CD4+ T-cell Populations

(2013) Devin M. Absher et al.   PLoS Genetics

Endogenous viruses: insights into viral evolution and impact on host biology

(2012) Cédric Feschotte et al.   NATURE REVIEWS GENETICS

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Transposable elements reveal a stem cell-specific class of long noncoding RNAs

(2012) David Kelley et al.   GENOME BIOLOGY

Cancer epigenetics: linking basic biology to clinical medicine

(2011) Hsing-Chen Tsai et al.   CELL RESEARCH

Hypomethylation of LINE-1 but not Alu in lymphocyte subsets of systemic lupus erythematosus patients

(2011) Jeerawat Nakkuntod et al.   CLINICA CHIMICA ACTA

Hypomethylation of Intragenic LINE-1 Represses Transcription in Cancer Cells through AGO2

(2011) Chatchawit Aporntewan et al.   PLoS One

Transposable elements have rewired the core regulatory network of human embryonic stem cells

(2010) Galih Kunarso et al.   NATURE GENETICS

Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma

(2010) Björn Lamprecht et al.   NATURE MEDICINE

Long-range function of an intergenic retrotransposon

(2010) W. Pi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetics in cancer

(2009) S. Sharma et al.   CARCINOGENESIS

Endogenous retroviral LTRs as promoters for human genes: A critical assessment

(2009) Carla J. Cohen et al.   GENE

The regulated retrotransposon transcriptome of mammalian cells

(2009) Geoffrey J Faulkner et al.   NATURE GENETICS

Automated paleontology of repetitive DNA with REANNOTATE

(2008) Vini Pereira   BMC GENOMICS