Genome-Wide Association Mapping and Genomic Selection for Alfalfa (Medicago sativa) Forage Quality Traits

Estimation of the indigestible fiber in different forage types

(2016) A. Palmonari et al.   JOURNAL OF ANIMAL SCIENCE

Marker imputation efficiency for genotyping-by-sequencing data in rice (Oryza sativa) and alfalfa (Medicago sativa)

(2016) Nelson Nazzicari et al.   MOLECULAR BREEDING

Accuracy of genomic selection for alfalfa biomass yield in different reference populations

(2015) Paolo Annicchiarico et al.   BMC GENOMICS

Identification of Quantitative Trait Loci for Alfalfa Forage Biomass Productivity during Drought Stress

(2015) Ian M. Ray et al.   CROP SCIENCE

Mapping Fall Dormancy and Winter Injury in Tetraploid Alfalfa

(2015) Xuehui Li et al.   CROP SCIENCE

Alfalfa forage yield and leaf/stem ratio: narrow-sense heritability, genetic correlation, and parent selection procedures

(2015) P. Annicchiarico   EUPHYTICA

Genome-wide association of drought-related and biomass traits with HapMap SNPs inMedicago truncatula

(2015) Yun Kang et al.   PLANT CELL AND ENVIRONMENT

Validation of Genotyping-By-Sequencing Analysis in Populations of Tetraploid Alfalfa by 454 Sequencing

(2015) Solen Rocher et al.   PLoS One

Identification of Loci Associated with Drought Resistance Traits in Heterozygous Autotetraploid Alfalfa (Medicago sativa L.) Using Genome-Wide Association Studies with Genotyping by Sequencing

(2015) Tiejun Zhang et al.   PLoS One

An improved genome release (version Mt4.0) for the model legume Medicago truncatula

(2014) Haibao Tang et al.   BMC GENOMICS

Achievements and Challenges in Improving Temperate Perennial Forage Legumes

(2014) Paolo Annicchiarico et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Identification of Aluminum Tolerance Quantitative Trait Loci in Tetraploid Alfalfa

(2014) Dong-Man Khu et al.   CROP SCIENCE

Influence of maturity on alfalfa hay nutritional fractions and indigestible fiber content

(2014) A. Palmonari et al.   JOURNAL OF DAIRY SCIENCE

A Saturated Genetic Linkage Map of Autotetraploid Alfalfa ( Medicago sativa L.) Developed Using Genotyping-by-Sequencing Is Highly Syntenous with the Medicago truncatula Genome

(2014) Xuehui Li et al.   G3-Genes Genomes Genetics

Candidate Genes and Genetic Architecture of Symbiotic and Agronomic Traits Revealed by Whole-Genome, Sequence-Based Association Genetics in Medicago truncatula

(2013) John Stanton-Geddes et al.   PLoS One

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

(2013) Fei Lu et al.   PLoS Genetics

Botanical traits, protein and carbohydrate fractions, ruminal degradability and energy contents of alfalfa hay harvested at three stages of maturity and in the afternoon and morning

(2012) M. Yari et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY

Physiological and morphological traits associated with adaptation of lucerne (Medicago sativa) to severely drought-stressed and to irrigated environments

(2012) P. Annicchiarico et al.   ANNALS OF APPLIED BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

QTL detection for forage quality and stem histology in four connected mapping populations of the model legume Medicago truncatula

(2012) Luz del Carmen Lagunes Espinoza et al.   THEORETICAL AND APPLIED GENETICS

Applied Genetics and Genomics in Alfalfa Breeding

(2012) Xuehui Li et al.   Agronomy-Basel

Extension of the bayesian alphabet for genomic selection

(2011) David Habier et al.   BMC BIOINFORMATICS

Technical note: Improved methodology for analyses of acid detergent fiber and acid detergent lignin

(2011) E. Raffrenato et al.   JOURNAL OF DAIRY SCIENCE

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Association Mapping of Biomass Yield and Stem Composition in a Tetraploid Alfalfa Breeding Population

(2011) Xuehui Li et al.   Plant Genome

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Adaptation of landrace and variety germplasm and selection strategies for lucerne in the Mediterranean basin

(2010) P. Annicchiarico et al.   FIELD CROPS RESEARCH

The Bayesian Lasso

(2008) Trevor Park et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION