Changes in bacterial community composition of Escherichia coli O157:H7 super-shedder cattle occur in the lower intestine

Comparative Transcriptomic Analysis of Rectal Tissue from Beef Steers Revealed Reduced Host Immunity in Escherichia coli O157:H7 Super-Shedders

(2016) Ou Wang et al.   PLoS One

The Gastrointestinal Tract as a Potential Infection Reservoir of Digital Dermatitis-Associated Treponemes in Beef Cattle and Sheep

(2015) L. E. Sullivan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cecum microbial communities from steers differing in feed efficiency1,2,3

(2015) P. R. Myer et al.   JOURNAL OF ANIMAL SCIENCE

Characterising the bacterial microbiota across the gastrointestinal tracts of dairy cattle: membership and potential function

(2015) Shengyong Mao et al.   Scientific Reports

Microbial community profiles of the colon from steers differing in feed efficiency

(2015) Phillip R Myer et al.   SpringerPlus

Emerging insights on intestinal dysbiosis during bacterial infections

(2014) Tu Anh N Pham et al.   CURRENT OPINION IN MICROBIOLOGY

Are Super-Shedder Feedlot Cattle Really Super?

(2014) Krysty D. Munns et al.   Foodborne Pathogens and Disease

Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations

(2014) Torey Looft et al.   ISME Journal

Escherichia coli O157:H7 Super-Shedder and Non-Shedder Feedlot Steers Harbour Distinct Fecal Bacterial Communities

(2014) Yong Xu et al.   PLoS One

Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota

(2014) Soo Ching Lee et al.   PLoS Neglected Tropical Diseases

Comparative Analysis of Microbial Profiles in Cow Rumen Fed with Different Dietary Fiber by Tagged 16S rRNA Gene Pyrosequencing

(2013) Honglada Thoetkiattikul et al.   CURRENT MICROBIOLOGY

AIEC pathobiont instigates chronic colitis in susceptible hosts by altering microbiota composition

(2013) Benoit Chassaing et al.   GUT

Investigation of bacterial diversity in the feces of cattle fed different diets1

(2013) M. Kim et al.   JOURNAL OF ANIMAL SCIENCE

Intestinal Dysbiosis and Depletion of Butyrogenic Bacteria in Clostridium difficile Infection and Nosocomial Diarrhea

(2013) V. C. Antharam et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Characterizing the microbiota across the gastrointestinal tract of a Brazilian Nelore steer

(2013) Marcelo Nagem Valério de Oliveira et al.   VETERINARY MICROBIOLOGY

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Composition and Similarity of Bovine Rumen Microbiota across Individual Animals

(2012) Elie Jami et al.   PLoS One

Bovine innate and adaptive immune responses against Escherichia coli O157:H7 and vaccination strategies to reduce faecal shedding in ruminants

(2012) Kris Vande Walle et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Effect of susceptibility to enterotoxigenic Escherichia coli F4 and of dietary tryptophan on gut microbiota diversity observed in healthy young pigs

(2012) Stefano Messori et al.   VETERINARY MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Salmonella, the host and its microbiota

(2011) Parameth Thiennimitr et al.   CURRENT OPINION IN MICROBIOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Escherichia coli O157:H7: Animal Reservoir and Sources of Human Infection

(2010) Witold A. Ferens et al.   Foodborne Pathogens and Disease

Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing1

(2010) T. R. Callaway et al.   JOURNAL OF ANIMAL SCIENCE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Escherichia coli O157:H7 Strains That Persist in Feedlot Cattle Are Genetically Related and Demonstrate an Enhanced Ability To Adhere to Intestinal Epithelial Cells

(2009) B. A. Carlson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prevalence and Impact of Bacteriophages on the Presence of Escherichia coli O157:H7 in Feedlot Cattle and Their Environment

(2009) Y. D. Niu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Longitudinal Study of Escherichia coli O157:H7 in a Beef Cattle Feedlot and Role of High-Level Shedders in Hide Contamination

(2009) T. M. Arthur et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)

(2008) Scot E Dowd et al.   BMC MICROBIOLOGY

Assessment of microbial diversity along the feline intestinal tract using 16S rRNA gene analysis

(2008) Lauren E. Ritchie et al.   FEMS MICROBIOLOGY ECOLOGY

Responses of Cattle to Gastrointestinal Colonization by Escherichia coli O157:H7

(2008) P. Nart et al.   INFECTION AND IMMUNITY

Decreased Diversity of the Fecal Microbiome in RecurrentClostridium difficile–Associated Diarrhea

(2008) Ju Young Chang et al.   JOURNAL OF INFECTIOUS DISEASES

Super-shedding and the link between human infection and livestock carriage of Escherichia coli O157

(2008) Margo Chase-Topping et al.   NATURE REVIEWS MICROBIOLOGY

The role of microbiota in infectious disease

(2008) Bärbel Stecher et al.   TRENDS IN MICROBIOLOGY