The Chloroplast Genome of Utricularia reniformis Sheds Light on the Evolution of the ndh Gene Complex of Terrestrial Carnivorous Plants from the Lentibulariaceae Family

InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams

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NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss

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Genome-Wide Analysis of Adaptive Molecular Evolution in the Carnivorous Plant Utricularia gibba

(2015) Lorenzo Carretero-Paulet et al.   Genome Biology and Evolution

High Gene Family Turnover Rates and Gene Space Adaptation in the Compact Genome of the Carnivorous Plant Utricularia gibba

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Analysis of the giant genomes ofFritillaria(Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size

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Comparative Genome Analysis Reveals Divergent Genome Size Evolution in a Carnivorous Plant Genus

(2015) Giang T. H. Vu et al.   Plant Genome

Complete Chloroplast Genome of the Multifunctional Crop Globe Artichoke and Comparison with Other Asteraceae

(2015) Pasquale L. Curci et al.   PLoS One

Transcriptional Slippage and RNA Editing Increase the Diversity of Transcripts in Chloroplasts: Insight from Deep Sequencing of Vigna radiata Genome and Transcriptome

(2015) Ching-Ping Lin et al.   PLoS One

The First Complete Chloroplast Genome Sequences in Actinidiaceae: Genome Structure and Comparative Analysis

(2015) Xiaohong Yao et al.   PLoS One

Complete Chloroplast Genome of Tanaecium tetragonolobum: The First Bignoniaceae Plastome

(2015) Alison Gonçalves Nazareno et al.   PLoS One

Seven New Complete Plastome Sequences Reveal Rampant Independent Loss of the ndh Gene Family across Orchids and Associated Instability of the Inverted Repeat/Small Single-Copy Region Boundaries

(2015) Hyoung Tae Kim et al.   PLoS One

Phylogeny of Lamiidae

(2014) Nancy F. Refulio-Rodriguez et al.   AMERICAN JOURNAL OF BOTANY

Evolution of genome size and chromosome number in the carnivorous plant genus Genlisea (Lentibulariaceae), with a new estimate of the minimum genome size in angiosperms

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(2014) Alexandros Stamatakis   BIOINFORMATICS

Plant genome size variation: bloating and purging DNA

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Pervasive transcription: illuminating the dark matter of bacterial transcriptomes

(2014) Joseph T. Wade et al.   NATURE REVIEWS MICROBIOLOGY

Comparative genomics of four Liliales families inferred from the complete chloroplast genome sequence of Veratrum patulum O. Loes. (Melanthiaceae)

(2013) Hoang Dang Khoa Do et al.   GENE

Disproportional Plastome-Wide Increase of Substitution Rates and Relaxed Purifying Selection in Genes of Carnivorous Lentibulariaceae

(2013) Susann Wicke et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

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Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

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Reproductive biology and pollination ofUtricularia reniformisA.St.-Hil. (Lentibulariaceae)

(2013) D. Clivati et al.   PLANT BIOLOGY

Mechanisms of Functional and Physical Genome Reduction in Photosynthetic and Nonphotosynthetic Parasitic Plants of the Broomrape Family

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The Plastid Genome of Najas flexilis: Adaptation to Submersed Environments Is Accompanied by the Complete Loss of the NDH Complex in an Aquatic Angiosperm

(2013) Elena L. Peredo et al.   PLoS One

Complete Sequencing of Five Araliaceae Chloroplast Genomes and the Phylogenetic Implications

(2013) Rong Li et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

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Microsatellite markers developed for Utricularia reniformis (Lentibulariaceae)

(2012) Débora Clivati et al.   AMERICAN JOURNAL OF BOTANY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

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Fast gapped-read alignment with Bowtie 2

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The Complete Chloroplast and Mitochondrial Genome Sequences of Boea hygrometrica: Insights into the Evolution of Plant Organellar Genomes

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Complete Chloroplast Genome Sequences of Important Oilseed Crop Sesamum indicum L

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Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

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Transcriptomics and molecular evolutionary rate analysis of the bladderwort (Utricularia), a carnivorous plant with a minimal genome

(2011) Enrique Ibarra-Laclette et al.   BMC PLANT BIOLOGY

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Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences

(2010) Bastian Schäferhoff et al.   BMC EVOLUTIONARY BIOLOGY

The largest eukaryotic genome of them all?

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Organization and expression of organellar genomes

(2010) A. C. Barbrook et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Plastid ndh genes in plant evolution

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BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Loss of all plastid ndh genes in Gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny

(2009) Thomas Werner Anthony Braukmann et al.   CURRENT GENETICS

A DNA barcode for land plants

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Reconstructing evolution: Gene transfer from plastids to the nucleus

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