A Single-Granule-Level Approach Reveals Ecological Heterogeneity in an Upflow Anaerobic Sludge Blanket Reactor

High organic loading treatment for industrial molasses wastewater and microbial community shifts corresponding to system development

(2015) Kyohei Kuroda et al.   BIORESOURCE TECHNOLOGY

Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor

(2015) Masaru K Nobu et al.   ISME Journal

Microbial Community Analysis of Anaerobic Reactors Treating Soft Drink Wastewater

(2015) Takashi Narihiro et al.   PLoS One

The nexus of syntrophy-associated microbiota in anaerobic digestion revealed by long-term enrichment and community survey

(2014) Takashi Narihiro et al.   ENVIRONMENTAL MICROBIOLOGY

The genome ofSyntrophorhabdus aromaticivoransstrain UI provides new insights for syntrophic aromatic compound metabolism and electron flow

(2014) Masaru K. Nobu et al.   ENVIRONMENTAL MICROBIOLOGY

Community Composition of Known and Uncultured Archaeal Lineages in Anaerobic or Anoxic Wastewater Treatment Sludge

(2014) Kyohei Kuroda et al.   MICROBIAL ECOLOGY

Global Patterns of Abundance, Diversity and Community Structure of the Aminicenantes (Candidate Phylum OP8)

(2014) Ibrahim F. Farag et al.   PLoS One

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Community and Proteomic Analysis of Methanogenic Consortia Degrading Terephthalate

(2012) Jer-Horng Wu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Formation and impact of granules in fostering clean energy production and wastewater treatment in upflow anaerobic sludge blanket (UASB) reactors

(2012) Tasneem Abbasi et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

Sequential treatment of PTA wastewater in a two-stage UASB process: Focusing on p-toluate degradation and microbial distribution

(2012) Ji Young Kim et al.   WATER RESEARCH

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Analysis of 16S rRNA Amplicon Sequencing Options on the Roche/454 Next-Generation Titanium Sequencing Platform

(2011) Hideyuki Tamaki et al.   PLoS One

Comparative 16S rRNA gene surveys of granular sludge from three upflow anaerobic bioreactors treating purified terephthalic acid (PTA) wastewater

(2011) S. D. Perkins et al.   WATER SCIENCE AND TECHNOLOGY

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium

(2010) Athanasios Lykidis et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Syntrophy in anaerobic global carbon cycles

(2009) Michael J McInerney et al.   CURRENT OPINION IN BIOTECHNOLOGY

Syntrophorhabdus aromaticivorans gen. nov., sp. nov., the First Cultured Anaerobe Capable of Degrading Phenol to Acetate in Obligate Syntrophic Associations with a Hydrogenotrophic Methanogen

(2008) Y.-L. Qiu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Granules characteristics in the vertical profile of a full-scale upflow anaerobic sludge blanket reactor treating poultry slaughterhouse wastewater

(2007) Valéria Del Nery et al.   BIORESOURCE TECHNOLOGY