Metabarcoding of Fecal Samples to Determine Herbivore Diets: A Case Study of the Endangered Pacific Pocket Mouse

Diet analysis of small mammal pests: A comparison of molecular and microhistological methods

(2016) Surrya KHANAM et al.   Integrative Zoology

A three-marker DNA barcoding approach for ecological studies of xerothermic plants and herbivorous insects from central Europe

(2015) Waldemar Heise et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Herbivore preference drives plant community composition

(2015) Anne Kempel et al.   ECOLOGY

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

(2015) Melanie Schirmer et al.   NUCLEIC ACIDS RESEARCH

Discrimination of grasshopper (Orthoptera: Acrididae) diet and niche overlap using next-generation sequencing of gut contents

(2015) Beverly McClenaghan et al.   Ecology and Evolution

Taxonomic Characterization of Honey Bee (Apis mellifera) Pollen Foraging Based on Non-Overlapping Paired-End Sequencing of Nuclear Ribosomal Loci

(2015) R. Scott Cornman et al.   PLoS One

Diet Analysis of Leopoldamys Neilli, a Cave-dwelling Rodent in Southeast Asia, Using Next-Generation Sequencing from Feces

(2014) Alice Latinne et al.   JOURNAL OF CAVE AND KARST STUDIES

Impact of next-generation sequencing error on analysis of barcoded plasmid libraries of known complexity and sequence

(2014) Claire T. Deakin et al.   NUCLEIC ACIDS RESEARCH

The dilemma of foraging herbivores: dealing with food and fear

(2014) Clare McArthur et al.   OECOLOGIA

Evaluating multiplexed next-generation sequencing as a method in palynology for mixed pollen samples

(2014) A. Keller et al.   PLANT BIOLOGY

DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet

(2013) M. De Barba et al.   Molecular Ecology Resources

Using Next-Generation Sequencing to Analyse the Diet of a Highly Endangered Land Snail (Powelliphanta augusta) Feeding on Endemic Earthworms

(2013) Stéphane Boyer et al.   PLoS One

Diet analysis by next-generation sequencing indicates the frequent consumption of introduced plants by the critically endangered red-headed wood pigeon (Columba janthina nitens) in oceanic island habitats

(2013) Haruko Ando et al.   Ecology and Evolution

A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

(2012) Michael Quail et al.   BMC GENOMICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Grinder: a versatile amplicon and shotgun sequence simulator

(2012) Florent E. Angly et al.   NUCLEIC ACIDS RESEARCH

Seed harvesting by a generalist consumer is context-dependent: Interactive effects across multiple spatial scales

(2012) Steven M. Ostoja et al.   OIKOS

Who is eating what: diet assessment using next generation sequencing

(2011) FRANCOIS POMPANON et al.   MOLECULAR ECOLOGY

New insights on diet variability revealed by DNA barcoding and high-throughput pyrosequencing: chamois diet in autumn as a case study

(2010) Gilles Rayé et al.   ECOLOGICAL RESEARCH

Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies

(2010) Osvaldo Zagordi et al.   NUCLEIC ACIDS RESEARCH

Validation of the ITS2 Region as a Novel DNA Barcode for Identifying Medicinal Plant Species

(2010) Shilin Chen et al.   PLoS One

Tablet--next generation sequence assembly visualization

(2009) I. Milne et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures

(2009) Eeva M Soininen et al.   Frontiers in Zoology

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

INVITED REVIEW: Molecular analysis of predation: a review of best practice for DNA-based approaches

(2008) R. A. KING et al.   MOLECULAR ECOLOGY

Coexisting generalist herbivores occupy unique nutritional feeding niches

(2008) S. T. Behmer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA