A Survey of Bioinformatics Database and Software Usage through Mining the Literature

Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature

(2016) Ibrahim Burak Ozyurt et al.   PLoS One

Ambiguity and variability of database and software names in bioinformatics

(2015) Geraint Duck et al.   Journal of Biomedical Semantics

Extracting patterns of database and software usage from the bioinformatics literature

(2014) G. Duck et al.   BIOINFORMATICS

bioNerDS: exploring bioinformatics’ database and software use through literature mining

(2013) Geraint Duck et al.   BMC BIOINFORMATICS

BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications

(2011) P. L. Whetzel et al.   NUCLEIC ACIDS RESEARCH

Using Workflows to Explore and Optimise Named Entity Recognition for Chemistry

(2011) BalaKrishna Kolluru et al.   PLoS One

LINNAEUS: A species name identification system for biomedical literature

(2010) Martin Gerner et al.   BMC BIOINFORMATICS

Computational science: ...Error

(2010) Zeeya Merali   NATURE

The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection

(2010) M. Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature

(2009) Guillermo de la Calle et al.   BMC BIOINFORMATICS

Databases, data tombs and dust in the wind

(2008) J. D. Wren et al.   BIOINFORMATICS

Methodology capture: discriminating between the "best" and the rest of community practice

(2008) James M Eales et al.   BMC BIOINFORMATICS