Adaptive Evolution of Eel Fluorescent Proteins from Fatty Acid Binding Proteins Produces Bright Fluorescence in the Marine Environment

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The Covert World of Fish Biofluorescence: A Phylogenetically Widespread and Phenotypically Variable Phenomenon

(2014) John S. Sparks et al.   PLoS One

Fairy wrasses perceive and respond to their deep red fluorescent coloration

(2014) T. Gerlach et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transcriptome deep-sequencing and clustering of expressed isoforms from Favia corals

(2013) Shaadi F Pooyaei Mehr et al.   BMC GENOMICS

A Bilirubin-Inducible Fluorescent Protein from Eel Muscle

(2013) Akiko Kumagai et al.   CELL

Effects of cold stress and heat stress on coral fluorescence in reef-building corals

(2013) Melissa S. Roth et al.   Scientific Reports

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Detecting Individual Sites Subject to Episodic Diversifying Selection

(2012) Ben Murrell et al.   PLoS Genetics

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Patterns of Fluorescent Protein Expression in Scleractinian Corals

(2010) David F. Gruber et al.   BIOLOGICAL BULLETIN

Green fluorescent protein regulation in the coral Acropora yongei during photoacclimation

(2010) M. S. Roth et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

Amphioxus encodes the largest known family of green fluorescent proteins, which have diversified into distinct functional classes

(2009) Erin K Bomati et al.   BMC EVOLUTIONARY BIOLOGY

A novel fluorescent protein purified from eel muscle

(2009) Seiichi Hayashi et al.   FISHERIES SCIENCE

A photoactivatable green-fluorescent protein from the phylum Ctenophora

(2009) S. H. D. Haddock et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Structural and functional analysis of fatty acid-binding proteins

(2008) Judith Storch et al.   JOURNAL OF LIPID RESEARCH

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Eel visual pigments revisited: The fate of retinal cones during metamorphosis

(2008) JAMES K. BOWMAKER et al.   VISUAL NEUROSCIENCE