Integrating mRNA and miRNA Weighted Gene Co-Expression Networks with eQTLs in the Nucleus Accumbens of Subjects with Alcohol Dependence

Differentially co-expressed genes in postmortem prefrontal cortex of individuals with alcohol use disorders: influence on alcohol metabolism-related pathways

(2014) Huiping Zhang et al.   HUMAN GENETICS

Cooperative gene regulation by microRNA pairs and their identification using a computational workflow

(2014) Ulf Schmitz et al.   NUCLEIC ACIDS RESEARCH

Using genetic information from candidate gene and genome-wide association studies in risk prediction for alcohol dependence

(2013) Jia Yan et al.   ADDICTION BIOLOGY

miRNAs in development and pathogenesis of the nervous system: Table 1

(2013) Jakub S. Nowak et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Positively correlated miRNA-mRNA regulatory networks in mouse frontal cortex during early stages of alcohol dependence

(2013) Yury O Nunez et al.   BMC GENOMICS

Alcohol use disorders and risk of Parkinson’s disease: findings from a Swedish national cohort study 1972–2008

(2013) Anna-Karin Eriksson et al.   BMC Neurology

MEDNIK syndrome: a novel defect of copper metabolism treatable by zinc acetate therapy

(2013) Diego Martinelli et al.   BRAIN

MicroRNA expression profile and functional analysis reveal that miR-382 is a critical novel gene of alcohol addiction

(2013) Jingyuan Li et al.   EMBO Molecular Medicine

Over-expression of the miRNA cluster at chromosome 14q32 in the alcoholic brain correlates with suppression of predicted target mRNA required for oligodendrocyte proliferation

(2013) A.M. Manzardo et al.   GENE

Widespread and extensive lengthening of 3' UTRs in the mammalian brain

(2013) P. Miura et al.   GENOME RESEARCH

De-repression of FOXO3a death axis by microRNA-132 and -212 causes neuronal apoptosis in Alzheimer's disease

(2013) Hon-Kit Andus Wong et al.   HUMAN MOLECULAR GENETICS

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

The neurobiology of alcohol consumption and alcoholism: An integrative history

(2013) Boris Tabakoff et al.   PHARMACOLOGY BIOCHEMISTRY AND BEHAVIOR

Expression quantitative trait loci: present and future

(2013) A. C. Nica et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Integration of Mouse and Human Genome-Wide Association Data Identifies KCNIP4 as an Asthma Gene

(2013) Blanca E. Himes et al.   PLoS One

miR-132/212 Knockout Mice Reveal Roles for These miRNAs in Regulating Cortical Synaptic Transmission and Plasticity

(2013) Judit Remenyi et al.   PLoS One

Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression

(2013) Vinod Kumar et al.   PLoS Genetics

Effects of alcohol on the membrane excitability and synaptic transmission of medium spiny neurons in the nucleus accumbens

(2012) Vincent N. Marty et al.   ALCOHOL

Matrix eQTL: ultra fast eQTL analysis via large matrix operations

(2012) A. A. Shabalin   BIOINFORMATICS

Transcriptional and epigenetic regulation of human microRNAs

(2012) Zifeng Wang et al.   CANCER LETTERS

Clinical Translation of Cell-Based Pharmacogenomic Discovery

(2012) N J Cox et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Lost in translation. New unexplored avenues for neuropsychopharmacology: epigenetics and microRNAs

(2012) Daniela Tardito et al.   EXPERT OPINION ON INVESTIGATIONAL DRUGS

Two gene co-expression modules differentiate psychotics and controls

(2012) C Chen et al.   MOLECULAR PSYCHIATRY

Genenames.org: the HGNC resources in 2013

(2012) Kristian A. Gray et al.   NUCLEIC ACIDS RESEARCH

Coordinated dysregulation of mRNAs and microRNAs in the rat medial prefrontal cortex following a history of alcohol dependence

(2012) J D Tapocik et al.   PHARMACOGENOMICS JOURNAL

Genetic Dissection of Acute Ethanol Responsive Gene Networks in Prefrontal Cortex: Functional and Mechanistic Implications

(2012) Aaron R. Wolen et al.   PLoS One

Systems genetics in “-omics” era: current and future development

(2012) Hong Li   THEORY IN BIOSCIENCES

MicroRNAs in cancers and neurodegenerative disorders

(2012) Yoshimasa Saito et al.   Frontiers in Genetics

Neuroimmune regulation of alcohol consumption: behavioral validation of genes obtained from genomic studies

(2011) Yuri A. Blednov et al.   ADDICTION BIOLOGY

Influence of Liver Pathology on Markers of Postmortem Brain Tissue Quality

(2011) Donna Sheedy et al.   ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH

Up-Regulation of MicroRNAs in Brain of Human Alcoholics

(2011) Joanne M. Lewohl et al.   ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH

Effects of chronic alcohol consumption on expression levels of APP and Aβ-producing enzymes

(2011) Sae-Rom Kim et al.   BMB Reports

Activation of inflammatory signaling by lipopolysaccharide produces a prolonged increase of voluntary alcohol intake in mice

(2011) Y.A. Blednov et al.   BRAIN BEHAVIOR AND IMMUNITY

Induction of innate immune genes in brain create the neurobiology of addiction

(2011) F.T. Crews et al.   BRAIN BEHAVIOR AND IMMUNITY

Gene set enrichment analysis: performance evaluation and usage guidelines

(2011) J.-H. Hung et al.   BRIEFINGS IN BIOINFORMATICS

MicroRNA profiling of Parkinson's disease brains identifies early downregulation of miR-34b/c which modulate mitochondrial function

(2011) Elena Miñones-Moyano et al.   HUMAN MOLECULAR GENETICS

miR-497 and miR-302b Regulate Ethanol-induced Neuronal Cell Death through BCL2 Protein and Cyclin D2

(2011) Sanjay Yadav et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Large scale microarray profiling and coexpression network analysis of CHO cells identifies transcriptional modules associated with growth and productivity

(2011) Colin Clarke et al.   JOURNAL OF BIOTECHNOLOGY

A Systems Level, Functional Genomics Analysis of Chronic Epilepsy

(2011) Kellen D. Winden et al.   PLoS One

Functional Characterization of the Dendritically Localized mRNA Neuronatin in Hippocampal Neurons

(2011) Elaine L. Oyang et al.   PLoS One

Brain expression quantitative trait locus mapping informs genetic studies of psychiatric diseases

(2011) Chunyu Liu   Neuroscience Bulletin

Genome-Wide Association Study of Alcohol Dependence Implicates a Region on Chromosome 11

(2010) Howard J. Edenberg et al.   ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH

Differential Changes in MAP Kinases, Histone Modifications, and Liver Injury in Rats Acutely Treated With Ethanol

(2010) Annayya R. Aroor et al.   ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH

Inflammation-Induced Anhedonia: Endotoxin Reduces Ventral Striatum Responses to Reward

(2010) Naomi I. Eisenberger et al.   BIOLOGICAL PSYCHIATRY

Coexpression network analysis of neural tissue reveals perturbations in developmental processes in schizophrenia

(2010) A. Torkamani et al.   GENOME RESEARCH

Striatal microRNA controls cocaine intake through CREB signalling

(2010) Jonathan A. Hollander et al.   NATURE

Mammalian microRNAs predominantly act to decrease target mRNA levels

(2010) Huili Guo et al.   NATURE

Genome-wide association identifies candidate genes that influence the human electroencephalogram

(2010) C. A. Hodgkinson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MicroRNA expression profiling in the prefrontal cortex of individuals affected with schizophrenia and bipolar disorders

(2010) Albert H. Kim et al.   SCHIZOPHRENIA RESEARCH

The addicted synapse: mechanisms of synaptic and structural plasticity in nucleus accumbens

(2010) Scott J. Russo et al.   TRENDS IN NEUROSCIENCES

Candidate Causal Regulatory Effects by Integration of Expression QTLs with Complex Trait Genetic Associations

(2010) Alexandra C. Nica et al.   PLoS Genetics

Trait-Associated SNPs Are More Likely to Be eQTLs: Annotation to Enhance Discovery from GWAS

(2010) Dan L. Nicolae et al.   PLoS Genetics

Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells

(2009) Mike J Mason et al.   BMC GENOMICS

Heavy alcohol consumption and neuropathological lesions: A post-mortem human study

(2009) Leena Aho et al.   JOURNAL OF NEUROSCIENCE RESEARCH

Genes involved in radiation therapy response in head and neck cancers

(2009) Catherine I. Dumur et al.   LARYNGOSCOPE

Combinatorial network of primary and secondary microRNA-driven regulatory mechanisms

(2009) Kang Tu et al.   NUCLEIC ACIDS RESEARCH

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

(2009) L. A. Hindorff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Systems Genetics Approach Implicates USF1, FADS3, and Other Causal Candidate Genes for Familial Combined Hyperlipidemia

(2009) Christopher L. Plaisier et al.   PLoS Genetics

Mechanisms of Neurodegeneration and Regeneration in Alcoholism

(2008) F. T. Crews et al.   ALCOHOL AND ALCOHOLISM

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Integrated Weighted Gene Co-expression Network Analysis with an Application to Chronic Fatigue Syndrome

(2008) Angela P Presson et al.   BMC Systems Biology

Genetic factors influencing alcohol dependence

(2008) R D Mayfield et al.   BRITISH JOURNAL OF PHARMACOLOGY

Alcohol enhances Aβ42-induced neuronal cell death through mitochondrial dysfunction

(2008) Do Yeon Lee et al.   FEBS LETTERS

Intermittent hypoxia conditioning prevents behavioral deficit and brain oxidative stress in ethanol-withdrawn rats

(2008) Marianna E. Jung et al.   JOURNAL OF APPLIED PHYSIOLOGY

Posttranscriptional Regulation of BK Channel Splice Variant Stability by miR-9 Underlies Neuroadaptation to Alcohol

(2008) Andrzej Z. Pietrzykowski et al.   NEURON

ERGR: An ethanol-related gene resource

(2008) A.-Y. Guo et al.   NUCLEIC ACIDS RESEARCH

Inferring MicroRNA Activities by Combining Gene Expression with MicroRNA Target Prediction

(2008) Chao Cheng et al.   PLoS One

Geometric Interpretation of Gene Coexpression Network Analysis

(2008) Steve Horvath et al.   PLoS Computational Biology

Assessing RNA quality in postmortem human brain tissue

(2007) Ia Chevyreva et al.   EXPERIMENTAL AND MOLECULAR PATHOLOGY