Tandem Duplications and the Limits of Natural Selection in Drosophila yakuba and Drosophila simulans

Parallel Geographic Variation in Drosophila melanogaster

(2014) Josie A. Reinhardt et al.   GENETICS

Landscape of Standing Variation for Tandem Duplications in Drosophila yakuba and Drosophila simulans

(2014) Rebekah L. Rogers et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genetic causes of convergent evolution

(2013) David L. Stern   NATURE REVIEWS GENETICS

A shared mechanism of defense against predators and parasites: chitin regulation and its implications for life-history theory

(2013) Andrew P. Beckerman et al.   Ecology and Evolution

Patterns of Neutral Diversity Under General Models of Selective Sweeps

(2012) G. Coop et al.   GENETICS

A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence

(2012) T. T. Hu et al.   GENOME RESEARCH

Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing

(2012) T. Zichner et al.   GENOME RESEARCH

Unconstrained evolution in short introns? - An analysis of genome-wide polymorphism and divergence data from Drosophila

(2012) F. Clemente et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Adaptation ofDrosophilato a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles

(2012) PABLO OROZCO-terWENGEL et al.   MOLECULAR ECOLOGY

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Diversification of complex butterfly wing patterns by repeated regulatory evolution of a Wnt ligand

(2012) A. Martin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Divergent role of the Hox gene Antennapedia in spiders is responsible for the convergent evolution of abdominal limb repression

(2012) S. Khadjeh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Molecular Diversity of Adaptive Convergence

(2012) O. Tenaillon et al.   SCIENCE

Parallel Molecular Evolution in an Herbivore Community

(2012) Y. Zhen et al.   SCIENCE

Chimeric Genes as a Source of Rapid Evolution in Drosophila melanogaster

(2011) R. L. Rogers et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene amplification and insecticide resistance

(2011) Chris Bass et al.   PEST MANAGEMENT SCIENCE

Successive Increases in the Resistance of Drosophila to Viral Infection through a Transposon Insertion Followed by a Duplication

(2011) Michael M. Magwire et al.   PLoS Genetics

Drosophila Duplication Hotspots Are Associated with Late-Replicating Regions of the Genome

(2011) Margarida Cardoso-Moreira et al.   PLoS Genetics

Convergent Evolution: Pick Your Poison Carefully

(2010) Edmund D. Brodie   CURRENT BIOLOGY

Effective Population Size and the Efficacy of Selection on the X Chromosomes of Two Closely Related Drosophila Species

(2010) Peter Andolfatto et al.   Genome Biology and Evolution

Validation of Rearrangement Break Points Identified by Paired-End Sequencing in Natural Populations of Drosophila melanogaster

(2010) Julie M. Cridland et al.   Genome Biology and Evolution

Age-dependent chromosomal distribution of male-biased genes in Drosophila

(2010) Y. E. Zhang et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

On the Utility of Short Intron Sequences as a Reference for the Detection of Positive and Negative Selection in Drosophila

(2010) J. Parsch et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide analysis of a long-term evolution experiment with Drosophila

(2010) Molly K. Burke et al.   NATURE

Evidence that Adaptation in Drosophila Is Not Limited by Mutation at Single Sites

(2010) Talia Karasov et al.   PLoS Genetics

Copy Number Variation and Transposable Elements Feature in Recent, Ongoing Adaptation at the Cyp6g1 Locus

(2010) Joshua M. Schmidt et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The Genetic Architecture of Skeletal Convergence and Sex Determination in Ninespine Sticklebacks

(2009) Michael D. Shapiro et al.   CURRENT BIOLOGY

Adaptive landscapes and protein evolution

(2009) M. Carneiro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct developmental mechanisms underlie the evolutionary diversification of Drosophila sex combs

(2009) K. Tanaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

(2009) Y. F. Chan et al.   SCIENCE

Chromosomal Rearrangement Inferred From Comparisons of 12 Drosophila Genomes

(2008) A. Bhutkar et al.   GENETICS

Patterns of Amino Acid Evolution in the Drosophila ananassae Chimeric Gene, siren, Parallel Those of Other Adh-Derived Chimeras

(2008) H.-J. Shih et al.   GENETICS

Formation and Longevity of Chimeric and Duplicate Genes in Drosophila melanogaster

(2008) R. L. Rogers et al.   GENETICS

On the origin of new genes in Drosophila

(2008) Q. Zhou et al.   GENOME RESEARCH

Positive and Negative Selection on Noncoding DNA in Drosophila simulans

(2008) P. R. Haddrill et al.   MOLECULAR BIOLOGY AND EVOLUTION

Turning a hobby into a job: How duplicated genes find new functions

(2008) Gavin C. Conant et al.   NATURE REVIEWS GENETICS

Natural Selection Shapes Genome-Wide Patterns of Copy-Number Polymorphism in Drosophila melanogaster

(2008) J. J. Emerson et al.   SCIENCE

Sex chromosomes and speciation in Drosophila

(2008) Daven C. Presgraves   TRENDS IN GENETICS

An Approximate Bayesian Estimator Suggests Strong, Recurrent Selective Sweeps in Drosophila

(2008) Jeffrey D. Jensen et al.   PLoS Genetics