Comparison of the Equine Reference Sequence with Its Sanger Source Data and New Illumina Reads

Annotation of the Protein Coding Regions of the Equine Genome

(2015) Matthew S. Hestand et al.   PLoS One

Applied equine genetics

(2014) C. J. Finno et al.   EQUINE VETERINARY JOURNAL

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

(2013) Ludovic Orlando et al.   NATURE

Analysis of Unannotated Equine Transcripts Identified by mRNA Sequencing

(2013) Stephen J. Coleman et al.   PLoS One

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Structural annotation of equine protein-coding genes determined by mRNA sequencing

(2010) S. J. Coleman et al.   ANIMAL GENETICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse

(2009) C. M. Wade et al.   SCIENCE