4.6 Article

MicroRNA-21 Regulates PI3K/Akt/mTOR Signaling by Targeting TGFβI during Muscle Development in Pigs

期刊

PLOS ONE
卷 10, 期 5, 页码 -

出版社

PUBLIC LIBRARY SCIENCE
DOI: 10.1371/journal.pone.0119396

关键词

-

资金

  1. National Natural Science Foundation of China [31171192, 31330074]
  2. National Basic Research Program of China [2012CB124706-6]
  3. National Key Project [2014ZX08009-001]
  4. Agricultural Science and Technology Innovation Program [ASTIP-IAS05]

向作者/读者索取更多资源

MicroRNAs (miRNAs), which are short (22-24 base pairs), non-coding RNAs, play critical roles in myogenesis. Using Solexa deep sequencing, we detected the expression levels of 229 and 209 miRNAs in swine skeletal muscle at 90 days post-coitus (E90) and 100 days postnatal (D100), respectively. A total of 138 miRNAs were up-regulated on E90, and 31 were up-regulated on D100. Of these, 9 miRNAs were selected for the validation of the small RNA libraries by quantitative RT-PCR (RT-qPCR). We found that miRNA-21 was down-regulated by 17-fold on D100 (P<0.001). Bioinformatics analysis suggested that the transforming growth factor beta-induced (TGFaI) gene was a potential target of miRNA-21. Both dual luciferase reporter assays and western blotting demonstrated that the TGFbI gene was regulated by miRNA-21. Co-expression analysis revealed that the mRNA expression levels of miRNA-21 and TGFaI were negatively correlated (r = -0.421, P = 0.026) in skeletal muscle during the 28 developmental stages. Our results revealed that more miRNAs are expressed in prenatal than in postnatal skeletal muscle. The miRNA-21 is a novel myogenic miRNA that is involved in skeletal muscle development and regulates PI3K/Akt/mTOR signaling by targeting the TGFaI gene.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.6
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Genetics & Heredity

Developmental atlas of the RNA editome in Sus scrofa skeletal muscle

Yalan Yang, Min Zhu, Xinhao Fan, Yilong Yao, Junyu Yan, Yijie Tang, Siyuan Liu, Kui Li, Zhonglin Tang

DNA RESEARCH (2019)

Article Genetics & Heredity

SCDevDB: A Database for Insights Into Single-Cell Gene Expression Profiles During Human Developmental Processes

Zishuai Wang, Xikang Feng, Shuai Cheng Li

FRONTIERS IN GENETICS (2019)

Correction Genetics & Heredity

SCDevDB: A Database for Insights Into Single-Cell Gene Expression Profiles During Human Developmental Processes (vol 10, 903, 2019)

Zishuai Wang, Xikang Feng, Shuai Cheng Li

FRONTIERS IN GENETICS (2019)

Article Biochemical Research Methods

MIRIA: a webserver for statistical, visual and meta-analysis of RNA editing data in mammals

Xikang Feng, Zishuai Wang, Hechen Li, Shuai Cheng Li

BMC BIOINFORMATICS (2019)

Article Chemistry, Medicinal

Insights into the Synthesis, Secretion and Curing of Barnacle Cyprid Adhesive via Transcriptomic and Proteomic Analyses of the Cement Gland

Guoyong Yan, Jin Sun, Zishuai Wang, Pei-Yuan Qian, Lisheng He

MARINE DRUGS (2020)

Article Agriculture, Dairy & Animal Science

Identification of Ovarian Circular RNAs and Differential Expression Analysis between MeiShan and Large White Pigs

Guoming Liang, Junyu Yan, Jin Guo, Zhonglin Tang

ANIMALS (2020)

Article Biochemistry & Molecular Biology

Landscape of tissue-specific RNA Editome provides insight into co-regulated and altered gene expression in pigs (Sus-scrofa)

A. Adetula Et Al Abiola Adetula, Xinhao Fan, Yongsheng Zhang, Yilong Yao, Junyu Yan, Muya Chen, Yijie Tang, Yuwen Liu, Guoqiang Yi, Kui Li, Zhonglin Tang

Summary: RNA editing generates genetic diversity in mammals by altering amino acid and miRNA targeting site sequences, influencing RNA stability, and changing gene expression. This study identified a large number of A-to-I RNA editing sites across tissues in pigs and highlighted the impact on gene regulation, particularly in skeletal muscle. The findings suggest a new layer of regulation in understanding genetic mechanisms behind phenotype variance in animals.

RNA BIOLOGY (2021)

Article Genetics & Heredity

The genome variation and developmental transcriptome maps reveal genetic differentiation of skeletal muscle in pigs

Yalan Yang, Junyu Yan, Xinhao Fan, Jiaxing Chen, Zishuai Wang, Xiaoqin Liu, Guoqiang Yi, Yuwen Liu, Yongchao Niu, Longchao Zhang, Lixian Wang, ShuaiCheng Li, Kui Li, Zhonglin Tang

Summary: This study investigated the genetic and molecular regulation of skeletal muscle development and diversity by comparing the genome and skeletal muscle transcriptome differences between Chinese local Tongcheng and commercial Landrace pigs. The results revealed the role of coding and non-coding RNAs, such as SATB2 and XLOC_036765, in skeletal muscle development and diversity, providing valuable insights for improving meat production traits in pig breeding.

PLOS GENETICS (2021)

Article Agriculture, Dairy & Animal Science

Identification of imprinted genes in the skeletal muscle of newborn piglets by high-throughput sequencing

Xinhua Hou, Zishuai Wang, Liangyu Shi, Ligang Wang, Fuping Zhao, Xin Liu, Hongmei Gao, Lijun Shi, Hua Yan, Lixian Wang, Longchao Zhang

Summary: The study explored the characteristics of imprinted genes in porcine skeletal muscle growth using DNA-seq and RNA-seq, revealing paternal-maternal conflict theory and the expression status of maternal gene H1-3 for the first time.

ANIMAL GENETICS (2022)

Article Genetics & Heredity

Identification of circRNAs Associated with Adipogenesis Based on RNA-Seq Data in Pigs

Qiaowei Li, Liyuan Wang, Kai Xing, Yalan Yang, Adeyinka Abiola Adetula, Yuwen Liu, Guoqiang Yi, Hongfu Zhang, Torres Sweeney, Zhonglin Tang

Summary: This study compared the spatio-temporal expression pattern of circRNAs between different adipose deposition breeds in pigs. It identified circRNAs involved in the regulation of adipogenesis and analyzed the interaction between circRNAs and miRNAs. The study revealed important circRNAs and their target genes enriched in fatty acid biosynthesis, fatty acid metabolism, and Wnt/TGF-beta signaling pathways. These findings provide valuable insights into the molecular mechanism of circRNAs in pig adipose biology.
Review Biochemistry & Molecular Biology

Recent Progress on Circular RNAs in the Development of Skeletal Muscle and Adipose Tissues of Farm Animals

Shanying Yan, Yangli Pei, Jiju Li, Zhonglin Tang, Yalan Yang

Summary: Circular RNAs (circRNAs) are a highly conserved and specifically expressed class of covalently closed non-coding RNAs, which can function as miRNA sponges, protein scaffolds, and regulatory factors. They play various roles in development and other biological processes in mammals. Recent advances in circRNA-related studies of skeletal muscle and adipose in farm animals have been highlighted, including their biogenesis, properties, biological functions, and regulatory mechanisms. Furthermore, their effects on economic traits such as meat yield and quality have been comprehensively summarized. CircRNAs are proposed as potential novel targets to improve meat yield and quality traits during animal breeding.

BIOMOLECULES (2023)

Article Genetics & Heredity

Genome-Wide Detection of Copy Number Variations Associated with Miniature Features in Horses

Md. Panir Choudhury, Zihao Wang, Min Zhu, Shaohua Teng, Jing Yan, Shuwei Cao, Guoqiang Yi, Yuwen Liu, Yuying Liao, Zhonglin Tang

Summary: This study conducted a comprehensive analysis of copy number variations (CNVs) in different horse breeds, and identified genomic regions associated with miniature features. Functional annotation revealed the biological functions and adaptations related to these CNVs.
Review Biochemistry & Molecular Biology

Regulation of RNA N6-methyladenosine modification and its emerging roles in skeletal muscle development

Jiju Li, Yangli Pei, Rong Zhou, Zhonglin Tang, Yalan Yang

Summary: N-6-methyladenosine (m(6)A) modification is a widely conserved chemical modification in cellular RNAs that plays a critical role in skeletal muscle development. Exploration of the functions and mechanisms of m(6)A modification and its regulators provides a deeper understanding of the regulatory mechanisms underlying skeletal muscle development.

INTERNATIONAL JOURNAL OF BIOLOGICAL SCIENCES (2021)

Article Biochemistry & Molecular Biology

A comprehensive epigenome atlas reveals DNA methylation regulating skeletal muscle development

Yalan Yang, Xinhao Fan, Junyu Yan, Muya Chen, Min Zhu, Yijie Tang, Siyuan Liu, Zhonglin Tang

Summary: The study generated the first single-base resolution DNA methylome and transcriptome maps of porcine skeletal muscle across 27 developmental stages. The results showed a decrease in overall methylation level from embryo to adult, and identified over 40,000 developmentally differentially methylated CpGs.

NUCLEIC ACIDS RESEARCH (2021)

Article Biotechnology & Applied Microbiology

I-Impute: a self-consistent method to impute single cell RNA sequencing data

Xikang Feng, Lingxi Chen, Zishuai Wang, Shuai Cheng Li

BMC GENOMICS (2020)

暂无数据