A Grammar Inference Approach for Predicting Kinase Specific Phosphorylation Sites

An ensemble method approach to investigate kinase-specific phosphorylation sites

(2014) Sutapa Datta et al.   International Journal of Nanomedicine

KinomeXplorer: an integrated platform for kinome biology studies

(2014) Heiko Horn et al.   NATURE METHODS

PSEA: Kinase-specific prediction and analysis of human phosphorylation substrates

(2014) Sheng-Bao Suo et al.   Scientific Reports

A Composite Method Based on Formal Grammar and DNA Structural Features in Detecting Human Polymerase II Promoter Region

(2013) Sutapa Datta et al.   PLoS One

AMS 4.0: consensus prediction of post-translational modifications in protein sequences

(2012) Dariusz Plewczynski et al.   AMINO ACIDS

Computational inference of grammars for larger-than-gene structures from annotated gene sequences

(2011) G. Tsafnat et al.   BIOINFORMATICS

Computational prediction of eukaryotic phosphorylation sites

(2011) B. Trost et al.   BIOINFORMATICS

Discovery of Protein Phosphorylation Motifs through Exploratory Data Analysis

(2011) Yi-Cheng Chen et al.   PLoS One

PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship

(2010) Inkyung Jung et al.   BMC BIOINFORMATICS

Identifying Protein-Kinase-Specific Phosphorylation Sites Based on the Bagging–AdaBoost Ensemble Approach

(2010) Zhiwen Yu et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites

(2010) Jianjiong Gao et al.   MOLECULAR & CELLULAR PROTEOMICS

Phospho.ELM: a database of phosphorylation sites--update 2011

(2010) H. Dinkel et al.   NUCLEIC ACIDS RESEARCH

RegPhos: a system to explore the protein kinase–substrate phosphorylation network in humans

(2010) Tzong-Yi Lee et al.   NUCLEIC ACIDS RESEARCH

GPS 2.1: enhanced prediction of kinase-specific phosphorylation sites with an algorithm of motif length selection

(2010) Y. Xue et al.   PROTEIN ENGINEERING DESIGN & SELECTION

A stochastic context free grammar based framework for analysis of protein sequences

(2009) Witold Dyrka et al.   BMC BIOINFORMATICS

IgTM: An algorithm to predict transmembrane domains and topology in proteins

(2008) Piedachu Peris et al.   BMC BIOINFORMATICS

GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy

(2008) Yu Xue et al.   MOLECULAR & CELLULAR PROTEOMICS

Meta-prediction of phosphorylation sites with weighted voting and restricted grid search parameter selection

(2008) Ji Wan et al.   NUCLEIC ACIDS RESEARCH