Genetic and Molecular Characterization of Submergence Response Identifies Subtol6 as a Major Submergence Tolerance Locus in Maize

Novel Methods to Optimize Genotypic Imputation for Low-Coverage, Next-Generation Sequence Data in Crop Plants

(2015) Kelly Swarts et al.   Plant Genome

Hemoglobin Control of Cell Survival/Death Decision Regulates in Vitro Plant Embryogenesis

(2014) S. Huang et al.   PLANT PHYSIOLOGY

Flooding tolerance in interspecific introgression lines containing chromosome segments from teosinte (Zea nicaraguensis) in maize (Zea mays subsp. mays)

(2013) Y. Mano et al.   ANNALS OF BOTANY

SUB1A-mediated submergence tolerance response in rice involves differential regulation of the brassinosteroid pathway

(2013) Aaron J. Schmitz et al.   NEW PHYTOLOGIST

Two Rumex Species from Contrasting Hydrological Niches Regulate Flooding Tolerance through Distinct Mechanisms

(2013) H. van Veen et al.   PLANT CELL

Introgression of Novel Traits from a Wild Wheat Relative Improves Drought Adaptation in Wheat

(2013) D. F. Placido et al.   PLANT PHYSIOLOGY

Genome-Wide Expression of Transcriptomes and Their Co-Expression Pattern in Subtropical Maize (Zea mays L.) under Waterlogging Stress

(2013) Nepolean Thirunavukkarasu et al.   PLoS One

Dynamic QTL Analysis and Candidate Gene Mapping for Waterlogging Tolerance at Maize Seedling Stage

(2013) Khalid A. Osman et al.   PLoS One

Enhanced formation of aerenchyma and induction of a barrier to radial oxygen loss in adventitious roots of Zea nicaraguensis contribute to its waterlogging tolerance as compared with maize (Zea mays ssp. mays)

(2012) TOMOMI ABIKO et al.   PLANT CELL AND ENVIRONMENT

Waterproofing Crops: Effective Flooding Survival Strategies

(2012) J. Bailey-Serres et al.   PLANT PHYSIOLOGY

Characterization of miRNAs in Response to Short-Term Waterlogging in Three Inbred Lines of Zea mays

(2012) Zhijie Liu et al.   PLoS One

Making sense of low oxygen sensing

(2012) Julia Bailey-Serres et al.   TRENDS IN PLANT SCIENCE

Dual-Level Regulation of ACC Synthase Activity by MPK3/MPK6 Cascade and Its Downstream WRKY Transcription Factor during Ethylene Induction in Arabidopsis

(2012) Guojing Li et al.   PLoS Genetics

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization

(2011) Francesco Licausi et al.   NATURE

Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants

(2011) Daniel J. Gibbs et al.   NATURE

Molecular characterization of the submergence response of the Arabidopsis thaliana ecotype Columbia

(2011) Seung Cho Lee et al.   NEW PHYTOLOGIST

Pyrophosphate-Dependent Fructose-6-Phosphate 1-Phosphotransferase Induction and Attenuation of Hsp Gene Expression during Endosperm Modification in Quality Protein Maize

(2011) X. Guo et al.   PLANT PHYSIOLOGY

Arabidopsis thaliana WRKY25, WRKY26, and WRKY33 coordinate induction of plant thermotolerance

(2011) Shujia Li et al.   PLANTA

A shared DNA-damage-response pathway for induction of stem-cell death by UVB and by gamma irradiation

(2010) T. Furukawa et al.   DNA REPAIR

The RAV1 transcription factor positively regulates leaf senescence in Arabidopsis

(2010) Hye Ryun Woo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Epigenetic programming via histone methylation at WRKY53 controls leaf senescence in Arabidopsis thaliana

(2010) Nicole Ay et al.   PLANT JOURNAL

HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana

(2010) Francesco Licausi et al.   PLANT JOURNAL

The Submergence Tolerance Regulator Sub1A Mediates Stress-Responsive Expression of AP2/ERF Transcription Factors

(2010) K.-H. Jung et al.   PLANT PHYSIOLOGY

Cross-Kingdom Comparison of Transcriptomic Adjustments to Low-Oxygen Stress Highlights Conserved and Plant-Specific Responses

(2010) A. Mustroph et al.   PLANT PHYSIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Overexpression of the CBF2 transcriptional activator in Arabidopsis delays leaf senescence and extends plant longevity

(2009) Michal Sharabi-Schwager et al.   JOURNAL OF EXPERIMENTAL BOTANY

The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water

(2009) Yoko Hattori et al.   NATURE

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

Suppressor of gamma response 1 (SOG1) encodes a putative transcription factor governing multiple responses to DNA damage

(2009) K. Yoshiyama et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Properties of the Maize Nested Association Mapping Population

(2009) M. D. McMullen et al.   SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Arabidopsis Transcriptome Reveals Control Circuits Regulating Redox Homeostasis and the Role of an AP2 Transcription Factor

(2008) A. Khandelwal et al.   PLANT PHYSIOLOGY

Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice

(2008) T. Fukao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA