Article
Food Science & Technology
Qiyuan Jing, Shijian Liu, Yang Song, Xiaoqi Tao
Summary: In this study, a TaqMan qPCR method based on the cytochrome b gene was established for quantitative detection of beef tallow. A normalized Delta Cq method based on Cyt b and 18S rDNA was also created for quantitative analysis of oils, which was validated on simulated oil samples.
Article
Chemistry, Analytical
Waleed A. Hassanain, Julia Spoors, Christopher L. Johnson, Karen Faulds, Neil Keegan, Duncan Graham
Summary: The study introduces a novel testing platform for the rapid and simultaneous detection of two specific biomarkers of Clostridium difficile infection, providing a rapid, selective, sensitive, and cost-effective clinical evaluation method for CDI.
Article
Immunology
Li Yi, Manyu Jin, Mengxia Gao, Haikun Wang, Qingying Fan, Daniel Grenier, Liyun Sun, Shaohui Wang, Yang Wang
Summary: Respiratory infections greatly impact the swine industry globally, with co-infections of Streptococcus suis and Actinobacillus pleuropneumoniae often forming biofilms. However, the methods for detecting these bacteria in co-infections and biofilms are immature. This study successfully established a TaqMan real-time PCR method for simultaneous detection of S. suis and A. pleuropneumoniae, which may aid in disease detection, prevention, and control.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY
(2022)
Article
Multidisciplinary Sciences
Carolina Albuquerque, Davide Pagnossin, Kirsten Landsgaard, Jessica Simpson, Derek Brown, June Irvine, Denise Candlish, Alison E. Ridyard, Gillian Douce, Caroline Millins
Summary: The study indicates that canine carriage of Clostridioides difficile is 18.7%, with 34% of strains being toxigenic. Previous antibiotic treatment is significantly associated with carriage, but toxigenic strains do not correlate with diarrhoeal disease in dogs.
Article
Public, Environmental & Occupational Health
Florence Skyum, Ming Chen, Christian Backer Mogensen
Summary: This study evaluated a new fast in-house PCR assay for detecting norovirus and C difficile infections, showing acceptable sensitivity and specificity in fecal samples and rectal swabs. The assay reduced time consumption by half, indicating potential for clinical use pending further research to improve accuracy.
AMERICAN JOURNAL OF INFECTION CONTROL
(2022)
Article
Veterinary Sciences
Siti Tasnim Makhtar, Sheau Wei Tan, Nur Amalina Nasruddin, Nor Azlina Abdul Aziz, Abdul Rahman Omar, Farina Mustaffa-Kamal
Summary: A specific TaqMan-based real-time RT-PCR assay targeting the N gene of FeMV was developed in this study, showing higher detection rate and sensitivity in early detection of FeMV infection.
BMC VETERINARY RESEARCH
(2021)
Article
Biochemical Research Methods
Babu K. Nath, Shubhagata Das, Tridip Das, Jade K. Forwood, Shane R. Raidal
Summary: TaqMan qPCR is a robust and reliable technique for detecting and quantifying target DNA copies. This study reports the development and validation of a highly sensitive TaqMan qPCR for the detection of highly diverse PiCV in pigeon samples with excellent reproducibility, specificity, and sensitivity.
JOURNAL OF VIROLOGICAL METHODS
(2022)
Article
Biotechnology & Applied Microbiology
Xiao-xi Jia, Yuan-yuan Wang, Wen-zhu Zhang, Wen-ge Li, Lu-lu Bai, Jin-xing Lu, Chao-feng Ma, Yuan Wu
Summary: This study developed a new method for detecting toxigenic C. difficile directly from fecal samples using a single-tube multiplex real-time PCR, which showed improved detection efficiency. The method could be performed on various polymerase chain reaction devices, including point-of-care testing.
Review
Medicine, General & Internal
Ibrahim A. Al-Zahrani
Summary: Clostridioides difficile (C. difficile) infection is a global threat to many healthcare settings. Excessive use of antimicrobials, lack of optimal antibiotic policies, and suboptimal infection control practices have fueled the development of this health issue. Prudent use of antimicrobials and simple infection control measures can significantly reduce infection rates.
SAUDI MEDICAL JOURNAL
(2023)
Article
Fisheries
Han Lin, Jingyang Sun, Jie Ma, Zhendong Qin, Biao Jiang, Wei Li, Qing Wang, Youlu Su, Li Lin, Chun Liu
Summary: This study investigated the spread and replication of Klebsiella pneumoniae in infected bullfrog tissues. A qPCR assay was developed to detect and quantify the bacteria, with the spleen identified as the major site for K. pneumoniae replication. Additionally, the mucus assay showed potential as a noninvasive tool for the early surveillance and prevention of K. pneumoniae in bullfrogs.
Article
Veterinary Sciences
Xiaohui Wen, Dianhong Lv, Qi Zhai, Xiurong Zhou, Mushtaq Ahmad Gondal, Mudassar Nazar, Muhammad Usman Saleem, Chunling Jia, Shao-Lun Zhai
Summary: A TaqMan-based RT-qPCR method was developed for efficient detection of PCV2e in clinical samples. The established PCR method can specifically identify PCV2e without cross-reacting with other PCV genotypes, PRV, and PPV.
PAKISTAN VETERINARY JOURNAL
(2022)
Article
Veterinary Sciences
Eman Anis, Denise Barnart, Amanda Barnard, Donna J. Kelly, Laurel E. Redding
Summary: The study evaluated the performance of commercial qPCR assays and a multiplex PCR for Clostridioides difficile compared to toxigenic culture. The findings suggest that while the assays may not be ideal for diagnostic purposes, their high sensitivities could make them useful for epidemiologic studies.
VETERINARY MEDICINE AND SCIENCE
(2021)
Article
Veterinary Sciences
Ahmed Samir, Khaled A. Abdel-Moein, Hala M. Zaher
Summary: The study detected high prevalence of C. difficile among diarrheic dogs and cats, with 90% testing positive and toxigenic strains found in 13% of animals. Sequencing analysis revealed genetic relatedness of strains from a cat to human cases, highlighting the potential public health threat posed by such strains.
VETERINARY SCIENCES
(2021)
Article
Plant Sciences
Ying-Hong Lin, Shih-Mao Shen, Chen-Jie Wen, Yi-Jia Lin, Tsai-De Chang, Sheng-Chi Chu
Summary: A rapid extraction reagent for the detection of the Rhizoctonia solani pathogen was developed in this study, along with specific primer sets and extraction protocols for on-site detection. Both TaqMan probe-based real-time PCR and SYBR green-based real-time PCR methods were proven effective for the field diagnosis of sheath blight in rice samples, demonstrating high sensitivity and specificity.
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Fisheries
Kyung-Ho Kim, Kwang-Min Choi, Gyoungsik Kang, Won-Sik Woo, Min-Young Sohn, Ha-Jeong Son, Dongbin Yun, Do-Hyung Kim, Chan-Il Park
Summary: The diagnostic performance of a TaqMan-based real-time PCR assay for detecting red sea bream iridovirus (RSIV) was evaluated. The assay showed rapid and accurate detection of RSIV, with high sensitivity and specificity.
Article
Biochemistry & Molecular Biology
Koji Atarashi, Takeshi Tanoue, Minoru Ando, Nobuhiko Kamada, Yuji Nagano, Seiko Narushima, Wataru Suda, Akemi Imaoka, Hiromi Setoyama, Takashi Nagamori, Eiji Ishikawa, Tatsuichiro Shima, Taeko Hara, Shoichi Kado, Toshi Jinnohara, Hiroshi Ohno, Takashi Kondo, Kiminori Toyooka, Eiichiro Watanabe, Shin-ichiro Yokoyama, Shunji Tokoro, Hiroshi Mori, Yurika Noguchi, Hidetoshi Morita, Ivaylo I. Ivanov, Tsuyoshi Sugiyama, Gabriel Nunez, J. Gray Camp, Masahira Hattori, Yoshinori Umesaki, Kenya Honda
Article
Microbiology
H. Makino, R. Martin, E. Ishikawa, A. Gawad, H. Kubota, T. Sakai, K. Oishi, R. Tanaka, K. Ben-Amor, J. Knol, A. Kushiro
BENEFICIAL MICROBES
(2015)
Article
Biotechnology & Applied Microbiology
Hiroyuki Kubota, Hiroshi Makino, Agata Gawad, Akira Kushiro, Eiji Ishikawa, Takafumi Sakai, Takuya Akiyama, Kazunori Matsuda, Rocio Martin, Jan Knol, Kenji Oishi
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2016)
Article
Biotechnology & Applied Microbiology
Hiroshi Makino, Akira Kushiro, Eiji Ishikawa, Delphine Muylaert, Hiroyuki Kubota, Takafumi Sakai, Kenji Oishi, Rocio Martin, Kaouther Ben Amor, Raish Oozeer, Jan Knol, Ryuichiro Tanaka
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2011)
Article
Food Science & Technology
Takafumi Sakai, Hiroshi Makino, Eiji Ishikawa, Kenji Oishi, Akira Kushiro
INTERNATIONAL JOURNAL OF FOOD SCIENCES AND NUTRITION
(2011)
Article
Biotechnology & Applied Microbiology
Eiji Ishikawa, Tatsuichiro Shima, Kazunori Suda, Yukio Shirasawa, Takashi Sato, Yoshinori Umesaki
JOURNAL OF BIOSCIENCE AND BIOENGINEERING
(2011)
Article
Biotechnology & Applied Microbiology
Eiji Ishikawa, Takahiro Matsuki, Hiroyuki Kubota, Hiroshi Makino, Takafumi Sakai, Kenji Oishi, Akira Kushiro, Junji Fujimoto, Koichi Watanabe, Masaaki Watanuki, Ryuichiro Tanaka
JOURNAL OF BIOSCIENCE AND BIOENGINEERING
(2013)
Article
Multidisciplinary Sciences
Hiroshi Makino, Akira Kushiro, Eiji Ishikawa, Hiroyuki Kubota, Agata Gawad, Takafumi Sakai, Kenji Oishi, Rocio Martin, Kaouther Ben-Amor, Jan Knol, Ryuichiro Tanaka
Article
Multidisciplinary Sciences
Rocio Martin, Hiroshi Makino, Aysun Cetinyurek Yavuz, Kaouther Ben-Amor, Mieke Roelofs, Eiji Ishikawa, Hiroyuki Kubota, Sophie Swinkels, Takafumi Sakai, Kenji Oishi, Akira Kushiro, Jan Knol
Article
Microbiology
Kaihei Oki, Takuya Akiyama, Kazunori Matsuda, Agata Gawad, Hiroshi Makino, Eiji Ishikawa, Kenji Oishi, Akira Kushiro, Junji Fujimoto
Article
Food Science & Technology
Tomohiko Terai, Kosuke Kato, Eiji Ishikawa, Masumi Nakao, Masahiko Ito, Kouji Miyazaki, Akira Kushiro, Susumu Imai, Yoshiaki Nomura, Nobuhiro Hanada, Takekazu Okumura
FOOD AND CHEMICAL TOXICOLOGY
(2020)
Article
Biotechnology & Applied Microbiology
Eiji Ishikawa, Masakazu Ikeda, Hidetsugu Sotoya, Minako Anbe, Hoshitaka Matsumoto, Mayumi Kiwaki, Hiroshi Hatano
Summary: Cell-bound beta-glycosidases from basidiomycetous yeasts have potential as biocatalysts in galactooligosaccharide (GOS) production. Among the identified BglA enzymes, Se-BglA showed the highest thermostability and GOS yield, making it the most promising enzyme for industrial applications.
JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
(2022)
Article
Multidisciplinary Sciences
Eiji Ishikawa, Tetsuya Yamada, Kazuaki Yamaji, Masaki Serata, Daichi Fujii, Yoshinori Umesaki, Hirokazu Tsuji, Koji Nomoto, Masahiro Ito, Nobuhiko Okada, Masato Nagaoka, Atsushi Gomi
Summary: The study revealed that a housekeeping sortase from Bifidobacterium bifidum YIT 10347 (BF-1) plays a critical role in adhesion to mucin. Multiple SDPs and pili appeared to work cooperatively in achieving adhesion, with the housekeeping sortase responsible for anchoring their substrates to the cell wall for proper biological function. Mutants lacking pilin or SDP exhibited similar adhesion properties to the wild type strain.
Article
Biotechnology & Applied Microbiology
E Ishikawa, T Sakai, H Ikemura, K Matsumoto, H Abe
JOURNAL OF BIOSCIENCE AND BIOENGINEERING
(2005)