De Novo Transcriptome Analysis of an Aerial Microalga Trentepohlia jolithus: Pathway Description and Gene Discovery for Carbon Fixation and Carotenoid Biosynthesis

De novo transcriptomic analysis of hydrogen production in the green alga Chlamydomonas moewusii through RNA-Seq

(2013) Shihui Yang et al.   Biotechnology for Biofuels

Transcriptome analysis reveals unique C4-like photosynthesis and oil body formation in an arachidonic acid-rich microalga Myrmecia incisa Reisigl H4301

(2013) Long-Ling Ouyang et al.   BMC GENOMICS

Transcriptome sequencing, annotation and expression analysis of Nannochloropsis sp. at different growth phases

(2013) Minggang Zheng et al.   GENE

Transcriptome analysis of Chlamydomonas reinhardtii during the process of lipid accumulation

(2013) Hexin Lv et al.   GENOMICS

Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions

(2013) Ralph Stadhouders et al.   Nature Protocols

Transcriptome analysis of the sulfate deficiency response in the marine microalgaEmiliania huxleyi

(2013) Michal Bochenek et al.   NEW PHYTOLOGIST

The physiology of ex vitro pineapple (Ananas comosus L. Merr. var MD-2) as CAM or C3 is regulated by the environmental conditions: proteomic and transcriptomic profiles

(2013) C. Aragón et al.   PLANT CELL REPORTS

Transcriptomic analysis of the oleaginous microalga Neochloris oleoabundans reveals metabolic insights into triacylglyceride accumulation

(2012) Hamid Rismani-Yazdi et al.   Biotechnology for Biofuels

De novo sequencing and analysis of the Ulva linza transcriptome to discover putative mechanisms associated with its successful colonization of coastal ecosystems

(2012) Xiaowen Zhang et al.   BMC GENOMICS

Massive Trentepohlia-Bloom in a Glacier Valley of Mt. Gongga, China, and a New Variety of Trentepohlia (Chlorophyta)

(2012) Guoxiang Liu et al.   PLoS One

The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation

(2012) Guillaume Blanc et al.   GENOME BIOLOGY

Transcriptome sequencing and annotation of the microalgae Dunaliella tertiolecta: Pathway description and gene discovery for production of next-generation biofuels

(2011) Hamid Rismani-Yazdi et al.   BMC GENOMICS

Potentials of Exopolysaccharides from Lactic Acid Bacteria

(2011) Seema Patel et al.   INDIAN JOURNAL OF MICROBIOLOGY

The role of transitory starch in C3, CAM, and C4 metabolism and opportunities for engineering leaf starch accumulation

(2011) Sean E. Weise et al.   JOURNAL OF EXPERIMENTAL BOTANY

Carotenoids in Algae: Distributions, Biosyntheses and Functions

(2011) Shinichi Takaichi   Marine Drugs

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Regulatory mechanisms underlying C4 photosynthesis

(2011) Lin Wang et al.   NEW PHYTOLOGIST

Examination of Triacylglycerol Biosynthetic Pathways via De Novo Transcriptomic and Proteomic Analyses in an Unsequenced Microalga

(2011) Michael T. Guarnieri et al.   PLoS One

The Regulation of Gene Expression Required for C4Photosynthesis

(2010) Julian M. Hibberd et al.   Annual Review of Plant Biology

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

RNA-Seq Analysis of Sulfur-DeprivedChlamydomonasCells Reveals Aspects of Acclimation Critical for Cell Survival

(2010) David González-Ballester et al.   PLANT CELL

Changes in Transcript Abundance in Chlamydomonas reinhardtii following Nitrogen Deprivation Predict Diversion of Metabolism

(2010) R. Miller et al.   PLANT PHYSIOLOGY

SNP detection for massively parallel whole-genome resequencing

(2009) R. Li et al.   GENOME RESEARCH

Biochemical characterization of carotenoids in two species of Trentepohlia (Trentepohliales, Chlorophyta)

(2009) Rumila Mukherjee et al.   JOURNAL OF APPLIED PHYCOLOGY

Phylogenetic relationships and species circumscription in Trentepohlia and Printzina (Trentepohliales, Chlorophyta)

(2009) Fabio Rindi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

(2009) A. Z. Worden et al.   SCIENCE

Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell

(2009) Peter von Dassow et al.   GENOME BIOLOGY

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Photosynthetic Carbon Assimilation in the Coccolithophorid Emiliania huxleyi (Haptophyta): Evidence for the Predominant Operation of the C3 Cycle and the Contribution of β-Carboxylases to the Active Anaplerotic Reaction

(2008) Yoshinori Tsuji et al.   PLANT AND CELL PHYSIOLOGY

A Model for Carbohydrate Metabolism in the Diatom Phaeodactylum tricornutum Deduced from Comparative Whole Genome Analysis

(2008) Peter G. Kroth et al.   PLoS One

Climate change effects on soil carbon dynamics and greenhouse gas emissions in Abies fabri forest of subalpine, southwest China

(2008) Xuyang Lu et al.   SOIL BIOLOGY & BIOCHEMISTRY