Investigation of the Josephin Domain Protein-Protein Interaction by Molecular Dynamics

The conformational ensemble of the disordered and aggregation-protective 182–291 region of ataxin-3

(2013) Gaetano Invernizzi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

A Hydrophobic Gold Surface Triggers Misfolding and Aggregation of the Amyloidogenic Josephin Domain in Monomeric Form, While Leaving the Oligomers Unaffected

(2013) Alessandra Apicella et al.   PLoS One

Intrinsic disorder modulates protein self-assembly and aggregation

(2012) A. De Simone et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nucleotide-dependent conformations of FtsZ dimers and force generation observed through molecular dynamics simulations

(2012) J. Hsin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiscale modeling of cellular actin filaments: From atomistic molecular to coarse-grained dynamics

(2012) Marco A. Deriu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A Major Role for Side-Chain Polyglutamine Hydrogen Bonding in Irreversible Ataxin-3 Aggregation

(2011) Antonino Natalello et al.   PLoS One

Flanking domain stability modulates the aggregation kinetics of a polyglutamine disease protein

(2011) Helen M. Saunders et al.   PROTEIN SCIENCE

Anisotropic Elastic Network Modeling of Entire Microtubules

(2010) Marco A. Deriu et al.   BIOPHYSICAL JOURNAL

Functional interactions as a survival strategy against abnormal aggregation

(2010) Masino Laura et al.   FASEB JOURNAL

Biomechanics of actin filaments: A computational multi-level study

(2010) Marco A. Deriu et al.   JOURNAL OF BIOMECHANICS

A series of PDB related databases for everyday needs

(2010) R. P. Joosten et al.   NUCLEIC ACIDS RESEARCH

Relationship between Ca2+-affinity and shielding of bulk water in the Ca2+-pump from molecular dynamics simulations

(2010) Y. Sugita et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

One-microsecond molecular dynamics simulation of channel gating in a nicotinic receptor homologue

(2010) H. Nury et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Josephin domain of ataxin-3 contains two distinct ubiquitin-binding sites

(2009) Giuseppe Nicastro et al.   BIOPOLYMERS

SCA3: Neurological features, pathogenesis and animal models

(2008) Olaf Riess et al.   CEREBELLUM

Mechanical Model of the Tubulin Dimer Based on Molecular Dynamics Simulations

(2008) So̸ren Enemark et al.   JOURNAL OF BIOMECHANICAL ENGINEERING-TRANSACTIONS OF THE ASME

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation