Metagenomic Identification of a Novel Salt Tolerance Gene from the Human Gut Microbiome Which Encodes a Membrane Protein with Homology to a brp/blh-Family β-Carotene 15,15′-Monooxygenase

A Beginner’s Guide to Phylogenetics

(2013) Roy D. Sleator   MICROBIAL ECOLOGY

Functional Environmental Screening of a Metagenomic Library Identifies stlA; A Unique Salt Tolerance Locus from the Human Gut Microbiome

(2013) Eamonn P. Culligan et al.   PLoS One

A single point mutation in the listerialbetLσA-dependent promoter leads to improved osmo- and chill-tolerance and a morphological shift at elevated osmolarity

(2013) Roland F Hoffmann et al.   Bioengineered

Synthesis, Release, and Recapture of Compatible Solute Proline by Osmotically Stressed Bacillus subtilis Cells

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Regulators of oxidative stress response genes in Escherichia coli and their functional conservation in bacteria

(2012) Sarah M. Chiang et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

The human gut microbiome: the ghost in the machine

(2012) Audrey Feeney et al.   Future Microbiology

Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome

(2012) Eamonn P Culligan et al.   ISME Journal

Functional Expression and Extension of Staphylococcal Staphyloxanthin Biosynthetic Pathway inEscherichia coli

(2012) Se Hyeuk Kim et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Tetarimycin A, an MRSA-Active Antibiotic Identified through Induced Expression of Environmental DNA Gene Clusters

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Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Function and Regulation of Vibrio campbellii Proteorhodopsin: Acquired Phototrophy in a Classical Organoheterotroph

(2012) Zheng Wang et al.   PLoS One

IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project

(2012) Victor M. Markowitz et al.   PLoS One

Phylogenetics

(2011) Roy D. Sleator   ARCHIVES OF MICROBIOLOGY

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Down-regulation of β-carotene hydroxylase increases β-carotene and total carotenoids enhancing salt stress tolerance in transgenic cultured cells of sweetpotato

(2011) Sun Ha Kim et al.   PHYTOCHEMISTRY

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

The RpoS-Mediated General Stress Response inEscherichia coli

(2010) Aurelia Battesti et al.   Annual Review of Microbiology

Carotenoid-Related Alteration of Cell Membrane Fluidity ImpactsStaphylococcus aureusSusceptibility to Host Defense Peptides

(2010) Nagendra N. Mishra et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Life in the gut: microbial responses to stress in the gastrointestinal tract

(2010) Petra Louis et al.   SCIENCE PROGRESS

Identification of a Novel Alkaliphilic Esterase Active at Low Temperatures by Screening a Metagenomic Library from Antarctic Desert Soil

(2009) C. Heath et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional metagenomics for enzyme discovery: challenges to efficient screening

(2009) Taku Uchiyama et al.   CURRENT OPINION IN BIOTECHNOLOGY

Carotenoids provide the major antioxidant defence in the globally significant N2-fixing marine cyanobacteriumTrichodesmium

(2009) Dovi Kelman et al.   ENVIRONMENTAL MICROBIOLOGY

Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment

(2009) Shoko Iwai et al.   ISME Journal

In VitroCharacterization of a Recombinant Blh Protein from an Uncultured Marine Bacterium as a β-Carotene 15,15′-Dioxygenase

(2009) Yeong-Su Kim et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The human superorganism – Of microbes and men

(2009) Roy D. Sleator   MEDICAL HYPOTHESES

The interaction between Listeria monocytogenes and the host gastrointestinal tract

(2009) R. D. Sleator et al.   MICROBIOLOGY-SGM

PROSITE, a protein domain database for functional characterization and annotation

(2009) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH