标题
RNA-Seq Gene Profiling - A Systematic Empirical Comparison
作者
关键词
-
出版物
PLoS One
Volume 9, Issue 9, Pages e107026
出版商
Public Library of Science (PLoS)
发表日期
2014-10-01
DOI
10.1371/journal.pone.0107026
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference
- (2013) Naoki Nariai et al. BIOINFORMATICS
- NURD: an implementation of a new method to estimate isoform expression from non-uniform RNA-seq data
- (2013) Xinyun Ma et al. BMC BIOINFORMATICS
- A comparison of methods for differential expression analysis of RNA-seq data
- (2013) Charlotte Soneson et al. BMC BIOINFORMATICS
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- A comparison of statistical methods for detecting differentially expressed genes from RNA-seq data
- (2012) Vanessa M. Kvam et al. AMERICAN JOURNAL OF BOTANY
- Tools for mapping high-throughput sequencing data
- (2012) Nuno A. Fonseca et al. BIOINFORMATICS
- OSA: a fast and accurate alignment tool for RNA-Seq
- (2012) Jun Hu et al. BIOINFORMATICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Modelling and simulating generic RNA-Seq experiments with the flux simulator
- (2012) Thasso Griebel et al. NUCLEIC ACIDS RESEARCH
- A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae
- (2012) Intawat Nookaew et al. NUCLEIC ACIDS RESEARCH
- IQSeq: Integrated Isoform Quantification Analysis Based on Next-Generation Sequencing
- (2012) Jiang Du et al. PLoS One
- IsoformEx: isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data
- (2011) Hyunsoo Kim et al. BMC BIOINFORMATICS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Differential expression in RNA-seq: A matter of depth
- (2011) S. Tarazona et al. GENOME RESEARCH
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- Fast and SNP-tolerant detection of complex variants and splicing in short reads
- (2010) T. D. Wu et al. BIOINFORMATICS
- Sorting nexin 6 interacts with breast cancer metastasis suppressor-1 and promotes transcriptional repression
- (2010) José Rivera et al. JOURNAL OF CELLULAR BIOCHEMISTRY
- Transcriptome genetics using second generation sequencing in a Caucasian population
- (2010) Stephen B. Montgomery et al. NATURE
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Caveolin 1 and Caveolin 2 are associated with breast cancer basal-like and triple-negative immunophenotype
- (2008) S E Elsheikh et al. BRITISH JOURNAL OF CANCER
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
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