A Novel Method for Identification and Quantification of Consistently Differentially Methylated Regions
出版年份 2014 全文链接
标题
A Novel Method for Identification and Quantification of Consistently Differentially Methylated Regions
作者
关键词
DNA methylation, Methylation, Astrocytoma, Gene expression, Colon, Spleen, Test statistics, Gene regulation
出版物
PLoS One
Volume 9, Issue 5, Pages e97513
出版商
Public Library of Science (PLoS)
发表日期
2014-05-13
DOI
10.1371/journal.pone.0097513
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data
- (2012) D. Wang et al. BIOINFORMATICS
- Integrating Prior Knowledge in Multiple Testing under Dependence with Applications to Detecting Differential DNA Methylation
- (2012) Pei Fen Kuan et al. BIOMETRICS
- A comparison of feature selection and classification methods in DNA methylation studies using the Illumina Infinium platform
- (2012) Joanna J Zhuang et al. BMC BIOINFORMATICS
- DNA methylation biomarkers in cancer: progress towards clinical implementation
- (2012) Thomas Mikeska et al. EXPERT REVIEW OF MOLECULAR DIAGNOSTICS
- The significance of epigenetic alterations in lung carcinogenesis
- (2012) Ewa Brzeziańska et al. MOLECULAR BIOLOGY REPORTS
- DNA methylation-based biomarkers in serum of patients with breast cancer
- (2012) Lien Van De Voorde et al. MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH
- Analysing and interpreting DNA methylation data
- (2012) Christoph Bock NATURE REVIEWS GENETICS
- DNA promoter methylation as a diagnostic and therapeutic biomarker in gallbladder cancer
- (2012) Pablo Letelier et al. Clinical Epigenetics
- POTEH hypomethylation, a new epigenetic biomarker for glioma prognosis
- (2011) Xiaoping Liu et al. BRAIN RESEARCH
- Genome-Wide DNA Methylation Profiling of CpG Islands in Breast Cancer Identifies Novel Genes Associated with Tumorigenicity
- (2011) V. K. Hill et al. CANCER RESEARCH
- Analysis of Promoter CpG Island Hypermethylation in Cancer: Location, Location, Location!
- (2011) I. J. H. van Vlodrop et al. CLINICAL CANCER RESEARCH
- Environment-Sensitive Epigenetics and the Heritability of Complex Diseases
- (2011) Robert E. Furrow et al. GENETICS
- A DNA methylation fingerprint of 1628 human samples
- (2011) A. F. Fernandez et al. GENOME RESEARCH
- DNA methylation profiling reveals novel biomarkers and important roles for DNA methyltransferases in prostate cancer
- (2011) Y. Kobayashi et al. GENOME RESEARCH
- Genome-scale analysis of aberrant DNA methylation in colorectal cancer
- (2011) T. Hinoue et al. GENOME RESEARCH
- Genome-wide survey reveals predisposing diabetes type 2-related DNA methylation variations in human peripheral blood
- (2011) Gidon Toperoff et al. HUMAN MOLECULAR GENETICS
- Epigenome-wide association studies for common human diseases
- (2011) Vardhman K. Rakyan et al. NATURE REVIEWS GENETICS
- DiseaseMeth: a human disease methylation database
- (2011) J. Lv et al. NUCLEIC ACIDS RESEARCH
- QDMR: a quantitative method for identification of differentially methylated regions by entropy
- (2011) Yan Zhang et al. NUCLEIC ACIDS RESEARCH
- Statistical Quantification of Methylation Levels by Next-Generation Sequencing
- (2011) Guodong Wu et al. PLoS One
- A Genome-Wide Study of DNA Methylation Patterns and Gene Expression Levels in Multiple Human and Chimpanzee Tissues
- (2011) Athma A. Pai et al. PLoS Genetics
- DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
- (2011) Jordana T Bell et al. GENOME BIOLOGY
- DNA methylation signatures define molecular subtypes of diffuse large B-cell lymphoma
- (2010) R. Shaknovich et al. BLOOD
- ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
- (2010) Lihua J Zhu et al. BMC BIOINFORMATICS
- Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
- (2010) Pan Du et al. BMC BIOINFORMATICS
- CpG Island Hypermethylation in Human Astrocytomas
- (2010) Xiwei Wu et al. CANCER RESEARCH
- Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage
- (2010) L. Chavez et al. GENOME RESEARCH
- Evaluation of affinity-based genome-wide DNA methylation data: Effects of CpG density, amplification bias, and copy number variation
- (2010) M. D. Robinson et al. GENOME RESEARCH
- DNA methylation patterns in luminal breast cancers differ from non-luminal subtypes and can identify relapse risk independent of other clinical variables
- (2010) Sitharthan Kamalakaran et al. Molecular Oncology
- Principles and challenges of genome-wide DNA methylation analysis
- (2010) Peter W. Laird NATURE REVIEWS GENETICS
- DNA Methylation Profiles of Ovarian Epithelial Carcinoma Tumors and Cell Lines
- (2010) Sahar Houshdaran et al. PLoS One
- Investigating the Epigenetic Effects of a Prototype Smoke-Derived Carcinogen in Human Cells
- (2010) Stella Tommasi et al. PLoS One
- Generalizing Moving Averages for Tiling Arrays Using Combined P-Value Statistics
- (2010) Katerina J Kechris et al. Statistical Applications in Genetics and Molecular Biology
- DNA methylation for subtype classification and prediction of treatment outcome in patients with childhood acute lymphoblastic leukemia
- (2009) L. Milani et al. BLOOD
- Identifying differentially methylated genes using mixed effect and generalized least square models
- (2009) Shuying Sun et al. BMC BIOINFORMATICS
- Finding the fifth base: Genome-wide sequencing of cytosine methylation
- (2009) R. Lister et al. GENOME RESEARCH
- The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
- (2009) Rafael A Irizarry et al. NATURE GENETICS
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- DNA Methylation Analysis of Chromosome 21 Gene Promoters at Single Base Pair and Single Allele Resolution
- (2009) Yingying Zhang et al. PLoS Genetics
- Comprehensive high-throughput arrays for relative methylation (CHARM)
- (2008) R. A. Irizarry et al. GENOME RESEARCH
- DNA methylation landscapes: provocative insights from epigenomics
- (2008) Miho M. Suzuki et al. NATURE REVIEWS GENETICS
- The methylome: approaches for global DNA methylation profiling
- (2008) Stephan Beck et al. TRENDS IN GENETICS
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started