Hybridization Capture Reveals Evolution and Conservation across the Entire Koala Retrovirus Genome

Heterogeneity of koala retrovirus isolates

(2013) Sayumi Shimode et al.   FEBS LETTERS

Identification of a Novel Subgroup of Koala Retrovirus from Koalas in Japanese Zoos

(2013) T. Shojima et al.   JOURNAL OF VIROLOGY

Construction and Characterization of an Infectious Molecular Clone of Koala Retrovirus

(2013) T. Shojima et al.   JOURNAL OF VIROLOGY

Dissecting the Dynamics of HIV-1 Protein Sequence Diversity

(2013) Yongli Hu et al.   PLoS One

Captured retroviral envelope syncytin gene associated with the unique placental structure of higher ruminants

(2013) Guillaume Cornelis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An exogenous retrovirus isolated from koalas with malignant neoplasias in a US zoo

(2013) W. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Expression and Regulation of the Endogenous Retrovirus 3 in Hodgkin’s Lymphoma Cells

(2013) Stefanie Kewitz et al.   Frontiers in Oncology

Prevalence of koala retrovirus in geographically diverse populations in Australia

(2012) GS Simmons et al.   AUSTRALIAN VETERINARY JOURNAL

Historically low mitochondrial DNA diversity in koalas (Phascolarctos cinereus)

(2012) Kyriakos Tsangaras et al.   BMC GENETICS

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

One Hundred Twenty Years of Koala Retrovirus Evolution Determined from Museum Skins

(2012) M. C. Avila-Arcos et al.   MOLECULAR BIOLOGY AND EVOLUTION

Escape from Human Immunodeficiency Virus Type 1 (HIV-1) Entry Inhibitors

(2012) Christopher De Feo et al.   Viruses-Basel

mapDamage: testing for damage patterns in ancient DNA sequences

(2011) Aurelien Ginolhac et al.   BIOINFORMATICS

Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens

(2011) V. C. Mason et al.   GENOME RESEARCH

Hybrid Capture and Next-Generation Sequencing Identify Viral Integration Sites from Formalin-Fixed, Paraffin-Embedded Tissue

(2011) Eric J. Duncavage et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Contribution of Intra- and Interhost Dynamics to Norovirus Evolution

(2011) R. A. Bull et al.   JOURNAL OF VIROLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death

(2011) V. J. Schuenemann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward the estimation of the absolute quality of individual protein structure models

(2010) Pascal Benkert et al.   BIOINFORMATICS

Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products

(2010) Tomislav Maricic et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Quantitative Deep Sequencing Reveals Dynamic HIV-1 Escape and Large Population Shifts during CCR5 Antagonist Therapy In Vivo

(2009) Athe M. N. Tsibris et al.   PLoS One

Origin, antiviral function and evidence for positive selection of the gammaretrovirus restriction gene Fv1 in the genus Mus

(2009) Y. Yan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes

(2009) A. W. Briggs et al.   SCIENCE

Endogenous retroviruses

(2008) R. Tarlinton et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Historical Mammal Extinction on Christmas Island (Indian Ocean) Correlates with Introduced Infectious Disease

(2008) Kelly B. Wyatt et al.   PLoS One