De Novo Transcriptome Sequencing and Analysis of the Cereal Cyst Nematode, Heterodera avenae

The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode

(2014) James A Cotton et al.   GENOME BIOLOGY

Utility of Host Delivered RNAi of Two FMRF Amide Like Peptides, flp-14 and flp-18, for the Management of Root Knot Nematode, Meloidogyne incognita

(2013) Pradeep Kumar Papolu et al.   PLoS One

GO-Elite: a flexible solution for pathway and ontology over-representation

(2012) Alexander C. Zambon et al.   BIOINFORMATICS

De novo sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodon punctatus)

(2012) Hilary C Miller et al.   BMC GENOMICS

Gene silencing in root lesion nematodes (Pratylenchus spp.) significantly reduces reproduction in a plant host

(2012) Jo-Anne C.H. Tan et al.   EXPERIMENTAL PARASITOLOGY

de novo analysis and functional classification of the transcriptome of the root lesion nematode, Pratylenchus thornei, after 454 GS FLX sequencing

(2012) Paul Nicol et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Synergistic Interaction of CLAVATA1, CLAVATA2, and RECEPTOR-LIKE PROTEIN KINASE 2 in Cyst Nematode Parasitism of Arabidopsis

(2012) Amy Replogle et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The Effector SPRYSEC-19 of Globodera rostochiensis Suppresses CC-NB-LRR-Mediated Disease Resistance in Plants

(2012) W. J. Postma et al.   PLANT PHYSIOLOGY

Schistosoma mansoni Venom Allergen Like Proteins Present Differential Allergic Responses in a Murine Model of Airway Inflammation

(2012) Leonardo Paiva Farias et al.   PLoS Neglected Tropical Diseases

Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles

(2011) J. Wang et al.   GENOME RESEARCH

NEMBASE4: The nematode transcriptome resource

(2011) Benjamin Elsworth et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Analysis of the transcriptome of the root lesion nematode Pratylenchus coffeae generated by 454 sequencing technology

(2011) Annelies Haegeman et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Horizontal Gene Transfer in Nematodes: A Catalyst for Plant Parasitism?

(2011) Annelies Haegeman et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems

(2011) André E Minoche et al.   GENOME BIOLOGY

Access to cellulose limits the efficiency of enzymatic hydrolysis: the role of amorphogenesis

(2010) Valdeir Arantes et al.   Biotechnology for Biofuels

Genome-wide survey and analysis of microsatellites in nematodes, with a focus on the plant-parasitic species Meloidogyne incognita

(2010) Philippe Castagnone-Sereno et al.   BMC GENOMICS

CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database

(2010) Byung H Park et al.   GLYCOBIOLOGY

The RCSB Protein Data Bank: redesigned web site and web services

(2010) P. W. Rose et al.   NUCLEIC ACIDS RESEARCH

DistinguishingHeterodera filipjeviandH. avenaeUsing Polymerase Chain Reaction-Restriction Fragment Length Polymorphism and Cyst Morphology

(2010) Guiping Yan et al.   PHYTOPATHOLOGY

The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates

(2010) Noa Sela et al.   GENOME BIOLOGY

A Secreted SPRY Domain-Containing Protein (SPRYSEC) from the Plant-Parasitic NematodeGlobodera rostochiensisInteracts with a CC-NB-LRR Protein from a Susceptible Tomato

(2009) Sajid Rehman et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Parasitism proteins in nematode–plant interactions

(2008) Eric L Davis et al.   CURRENT OPINION IN PLANT BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

(2008) Pierre Abad et al.   NATURE BIOTECHNOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism

(2008) C. H. Opperman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA