Discovering Functional Modules across Diverse Maize Transcriptomes Using COB, the Co-Expression Browser

powerlaw: A Python Package for Analysis of Heavy-Tailed Distributions

(2014) Jeff Alstott et al.   PLoS One

A Developmental Transcriptional Network for Maize Defines Coexpression Modules

(2013) G. S. Downs et al.   PLANT PHYSIOLOGY

Unraveling the KNOTTED1 regulatory network in maize meristems

(2012) N. Bolduc et al.   GENES & DEVELOPMENT

Exploring Tomato Gene Functions Based on Coexpression Modules Using Graph Clustering and Differential Coexpression Approaches

(2012) A. Fukushima et al.   PLANT PHYSIOLOGY

Reshaping of the maize transcriptome by domestication

(2012) R. Swanson-Wagner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

Global Landscape of a Co-Expressed Gene Network in Barley and its Application to Gene Discovery in Triticeae Crops

(2011) Keiichi Mochida et al.   PLANT AND CELL PHYSIOLOGY

Genome-wide atlas of transcription during maize development

(2011) Rajandeep S. Sekhon et al.   PLANT JOURNAL

Gene Coexpression Network Alignment and Conservation of Gene Modules between Two Grass Species: Maize and Rice

(2011) S. P. Ficklin et al.   PLANT PHYSIOLOGY

Cytoscape Web: an interactive web-based network browser

(2010) Christian T. Lopes et al.   BIOINFORMATICS

Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor

(2010) R. A. Swanson-Wagner et al.   GENOME RESEARCH

The Association of Multiple Interacting Genes with Specific Phenotypes in Rice Using Gene Coexpression Networks

(2010) Stephen P. Ficklin et al.   PLANT PHYSIOLOGY

A Scalable Approach for Discovering Conserved Active Subnetworks across Species

(2010) Raamesh Deshpande et al.   PLoS Computational Biology

Omics meet networks—using systems approaches to infer regulatory networks in plants

(2009) Miguel A Moreno-Risueno et al.   CURRENT OPINION IN PLANT BIOLOGY

A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

(2009) BJÖRN USADEL et al.   PLANT CELL AND ENVIRONMENT

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

(2009) BJ��RN USADEL et al.   PLANT CELL AND ENVIRONMENT

Distal Expression of knotted1 in Maize Leaves Leads to Reestablishment of Proximal/Distal Patterning and Leaf Dissection

(2009) J. Ramirez et al.   PLANT PHYSIOLOGY

Post-Domestication Selection in the Maize Starch Pathway

(2009) Longjiang Fan et al.   PLoS One

The Sleipnir library for computational functional genomics

(2008) C. Huttenhower et al.   BIOINFORMATICS

Overexpression of wound-responsive RNA-binding proteins induces leaf senescence and hypersensitive-like cell death

(2008) Cha Young Kim et al.   NEW PHYTOLOGIST

Sugar levels modulate sorbitol dehydrogenase expression in maize

(2008) Sylvia Morais de Sousa et al.   PLANT MOLECULAR BIOLOGY