A Draft De Novo Genome Assembly for the Northern Bobwhite (Colinus virginianus) Reveals Evidence for a Rapid Decline in Effective Population Size Beginning in the Late Pleistocene
出版年份 2014 全文链接
标题
A Draft De Novo Genome Assembly for the Northern Bobwhite (Colinus virginianus) Reveals Evidence for a Rapid Decline in Effective Population Size Beginning in the Late Pleistocene
作者
关键词
Bird genomics, Chickens, Sequence alignment, Zebra finch, Comparative genomics, Birds, Genomic libraries, Genome annotation
出版物
PLoS One
Volume 9, Issue 3, Pages e90240
出版商
Public Library of Science (PLoS)
发表日期
2014-03-13
DOI
10.1371/journal.pone.0090240
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Estimating Variable Effective Population Sizes from Multiple Genomes: A Sequentially Markov Conditional Sampling Distribution Approach
- (2013) S. Sheehan et al. GENETICS
- Embryological staging of the Zebra Finch,Taeniopygia guttata
- (2013) Jessica R. Murray et al. JOURNAL OF MORPHOLOGY
- The Norway spruce genome sequence and conifer genome evolution
- (2013) Björn Nystedt et al. NATURE
- Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle
- (2013) Xiangjiang Zhan et al. NATURE GENETICS
- Genome dynamics during experimental evolution
- (2013) Jeffrey E. Barrick et al. NATURE REVIEWS GENETICS
- A Multi-Platform Draft de novo Genome Assembly and Comparative Analysis for the Scarlet Macaw (Ara macao)
- (2013) Christopher M. Seabury et al. PLoS One
- Expression profiles for genes in the turkey major histocompatibility complex B-locus
- (2013) M. S. Monson et al. POULTRY SCIENCE
- Fine mapping of a linkage peak with integration of lipid traits identifies novel coronary artery disease genes on chromosome 5
- (2012) Daniel K Nolan et al. BMC GENETICS
- Interspecific effects of 4A-DNT (4-amino-2,6-dinitrotoluene) and RDX (1,3,5-trinitro-1,3,5-triazine) in Japanese quail, Northern bobwhite, and Zebra finch
- (2012) Michael J. Quinn et al. ECOTOXICOLOGY
- Variants in CXADR and F2RL1 are associated with blood pressure and obesity in African-Americans in regions identified through admixture mapping
- (2012) Priya B. Shetty et al. JOURNAL OF HYPERTENSION
- Analyses of pig genomes provide insight into porcine demography and evolution
- (2012) Martien A. M. Groenen et al. NATURE
- Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture
- (2012) Karol Estrada et al. NATURE GENETICS
- Gene-Based Analysis of Regionally Enriched Cortical Genes in GWAS Data Sets of Cognitive Traits and Psychiatric Disorders
- (2012) Kari M. Ersland et al. PLoS One
- A High-Coverage Genome Sequence from an Archaic Denisovan Individual
- (2012) M. Meyer et al. SCIENCE
- Genome-Wide Joint Meta-Analysis of SNP and SNP-by-Smoking Interaction Identifies Novel Loci for Pulmonary Function
- (2012) Dana B. Hancock et al. PLoS Genetics
- A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education
- (2012) Taras K Oleksyk et al. GigaScience
- On reversing the northern bobwhite population decline: 20 years later
- (2012) Fidel Hernández et al. WILDLIFE SOCIETY BULLETIN
- TimeTree2: species divergence times on the iPhone
- (2011) S. Kumar et al. BIOINFORMATICS
- Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits
- (2011) Rita PS Middelberg et al. BMC Medical Genetics
- Fipronil toxicity in northern bobwhite quail Colinus virginianus: Reduced feeding behaviour and sulfone metabolite formation
- (2011) Malsha Kitulagodage et al. CHEMOSPHERE
- Genetic mapping of the major histocompatibility complex in the zebra finch (Taeniopygia guttata)
- (2011) Robert Ekblom et al. IMMUNOGENETICS
- Staufen 2 regulates mGluR long-term depression and Map1b mRNA distribution in hippocampal neurons
- (2011) G. Lebeau et al. LEARNING & MEMORY
- Inference of human population history from individual whole-genome sequences
- (2011) Heng Li et al. NATURE
- Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function
- (2011) María Soler Artigas et al. NATURE GENETICS
- Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure
- (2011) Louise V Wain et al. NATURE GENETICS
- Genome-Wide Polymorphism and Comparative Analyses in the White-Tailed Deer (Odocoileus virginianus): A Model for Conservation Genomics
- (2011) Christopher M. Seabury et al. PLoS One
- Genome-Wide Association Study of Body Weight in Chicken F2 Resource Population
- (2011) Xiaorong Gu et al. PLoS One
- Upper lethal temperatures of Northern Bobwhite embryos and the thermal properties of their eggs
- (2011) K. S. Reyna et al. POULTRY SCIENCE
- Pre-Clovis Mastodon Hunting 13,800 Years Ago at the Manis Site, Washington
- (2011) M. R. Waters et al. SCIENCE
- The Buttermilk Creek Complex and the Origins of Clovis at the Debra L. Friedkin Site, Texas
- (2011) M. R. Waters et al. SCIENCE
- Roles of SATB2 in Osteogenic Differentiation and Bone Regeneration
- (2011) Jin Zhang et al. TISSUE ENGINEERING PART A
- Cardiomyopathy in α-Kinase 3 (ALPK3)–Deficient Mice
- (2011) I. Van Sligtenhorst et al. VETERINARY PATHOLOGY
- Timing of Ossification in Duck, Quail, and Zebra Finch: lntraspecific Variation, Heterochronies, and Life History Evolution
- (2011) Christian Mitgutsch et al. ZOOLOGICAL SCIENCE
- Association of JAG1 with Bone Mineral Density and Osteoporotic Fractures: A Genome-wide Association Study and Follow-up Replication Studies
- (2010) Annie W.C. Kung et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Quail Genomics: a knowledgebase for Northern bobwhite
- (2010) Arun Rawat et al. BMC BIOINFORMATICS
- Gene duplication and fragmentation in the zebra finch major histocompatibility complex
- (2010) Christopher N Balakrishnan et al. BMC BIOLOGY
- Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach
- (2010) Christoph Mayer et al. BMC GENOMICS
- Translocation to a fragmented landscape: survival, movement, and site fidelity of Northern Bobwhites
- (2010) Theron M. Terhune et al. ECOLOGICAL APPLICATIONS
- Genome-wide association analysis identifies multiple loci related to resting heart rate
- (2010) M. Eijgelsheim et al. HUMAN MOLECULAR GENETICS
- Effects of Polycyclic Aromatic Hydrocarbons in Northern Bobwhite Quail (Colinus virginianus)
- (2010) John M. Brausch et al. JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH-PART A-CURRENT ISSUES
- The genome of a songbird
- (2010) Wesley C. Warren et al. NATURE
- Hundreds of variants clustered in genomic loci and biological pathways affect human height
- (2010) Hana Lango Allen et al. NATURE
- Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies
- (2010) Cathy E Elks et al. NATURE GENETICS
- Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction
- (2010) Nona Sotoodehnia et al. NATURE GENETICS
- Alzheimer disease pathology in cognitively healthy elderly: A genome-wide study
- (2010) Patricia L. Kramer et al. NEUROBIOLOGY OF AGING
- Voxelwise genome-wide association study (vGWAS)
- (2010) Jason L. Stein et al. NEUROIMAGE
- Genome-Wide Pharmacogenomic Study of Neurocognition As an Indicator of Antipsychotic Treatment Response in Schizophrenia
- (2010) Joseph L McClay et al. NEUROPSYCHOPHARMACOLOGY
- From raw materials to validated system: the construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite
- (2010) Arun Rawat et al. PHYSIOLOGICAL GENOMICS
- Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing
- (2010) J. C. Roach et al. SCIENCE
- Longitudinal Genome-Wide Association of Cardiovascular Disease Risk Factors in the Bogalusa Heart Study
- (2010) Erin N. Smith et al. PLoS Genetics
- Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library
- (2009) Cecilia Sánchez et al. BMC GENOMICS
- Genome-wide Association Study of Anthropometric Traits in Korčula Island, Croatia
- (2009) Ozren Polašek et al. CROATIAN MEDICAL JOURNAL
- A preliminary assessment of relative sensitivities to foreign red blood cell challenges in the northern bobwhite for potential evaluation of immunotoxicity
- (2009) Michael J. Quinn et al. Journal of Immunotoxicology
- Evolution of the Vertebrate Gene Regulatory Network Controlled by the Transcriptional Repressor REST
- (2009) R. Johnson et al. MOLECULAR BIOLOGY AND EVOLUTION
- Common variants at ten loci modulate the QT interval duration in the QTSCD Study
- (2009) Arne Pfeufer et al. NATURE GENETICS
- Common variants at ten loci influence QT interval duration in the QTGEN Study
- (2009) Christopher Newton-Cheh et al. NATURE GENETICS
- Genome-wide copy number variation association study suggested VPS13B gene for osteoporosis in Caucasians
- (2009) F.-Y. Deng et al. OSTEOPOROSIS INTERNATIONAL
- Hippocampal Atrophy as a Quantitative Trait in a Genome-Wide Association Study Identifying Novel Susceptibility Genes for Alzheimer's Disease
- (2009) Steven G. Potkin et al. PLoS One
- The Last Glacial Maximum
- (2009) P. U. Clark et al. SCIENCE
- Multi-Organ Expression Profiling Uncovers a Gene Module in Coronary Artery Disease Involving Transendothelial Migration of Leukocytes and LIM Domain Binding 2: The Stockholm Atherosclerosis Gene Expression (STAGE) Study
- (2009) Sara Hägg et al. PLoS Genetics
- Ten microsatellite loci from Northern Bobwhite (Colinus virginianus)
- (2008) Brant C. Faircloth et al. CONSERVATION GENETICS
- Support for the minimal essential MHC hypothesis: a parrot with a single, highly polymorphic MHC class II B gene
- (2008) Colin R. Hughes et al. IMMUNOGENETICS
- Human influence on distribution and extinctions of the late Pleistocene Eurasian megafauna
- (2008) Diana Pushkina et al. JOURNAL OF HUMAN EVOLUTION
- The protein tyrosine phosphatase receptor type f (PTPRF) locus is associated with coronary artery disease in type 2 diabetes
- (2008) C. Menzaghi et al. JOURNAL OF INTERNAL MEDICINE
- Many sequence variants affecting diversity of adult human height
- (2008) Daniel F Gudbjartsson et al. NATURE GENETICS
- DNA from Pre-Clovis Human Coprolites in Oregon, North America
- (2008) M. T. P. Gilbert et al. SCIENCE
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