Ultra Deep Sequencing of a Baculovirus Population Reveals Widespread Genomic Variations

Proteomic analyses of baculovirus Anticarsia gemmatalis multiple nucleopolyhedrovirus budded and occluded virus

(2014) C. T. Braconi et al.   JOURNAL OF GENERAL VIROLOGY

Genomic diversity in European Spodoptera exigua multiple nucleopolyhedrovirus isolates

(2014) J. Theze et al.   JOURNAL OF GENERAL VIROLOGY

Sub-genomic RNA of defective interfering (D.I.) dengue viral particles is replicated in the same manner as full length genomes

(2014) Dongsheng Li et al.   VIROLOGY

Genomic and Functional Characteristics of Human Cytomegalovirus Revealed by Next-Generation Sequencing

(2014) Steven Sijmons et al.   Viruses-Basel

Population genomics supports baculoviruses as vectors of horizontal transfer of insect transposons

(2014) Clément Gilbert et al.   Nature Communications

Human cytomegalovirus intrahost evolution—a new avenue for understanding and controlling herpesvirus infections

(2014) Nicholas Renzette et al.   Current Opinion in Virology

The Transcriptome of the Baculovirus Autographa californica Multiple Nucleopolyhedrovirus in Trichoplusia ni Cells

(2013) Y.-R. Chen et al.   JOURNAL OF VIROLOGY

Deep Sequencing of Viral Genomes Provides Insight into the Evolution and Pathogenesis of Varicella Zoster Virus and Its Vaccine in Humans

(2013) Daniel P. Depledge et al.   MOLECULAR BIOLOGY AND EVOLUTION

The role of mutational robustness in RNA virus evolution

(2013) Adam S. Lauring et al.   NATURE REVIEWS MICROBIOLOGY

Quasispecies Analysis of JC Virus DNA Present in Urine of Healthy Subjects

(2013) Tom Van Loy et al.   PLoS One

Expression of a Peroral Infection Factor Determines Pathogenicity and Population Structure in an Insect Virus

(2013) Oihane Simón et al.   PLoS One

The Attenuated Genotype of Varicella-Zoster Virus Includes an ORF0 Transitional Stop Codon Mutation

(2012) G. A. Peters et al.   JOURNAL OF VIROLOGY

The ac53, ac78, ac101, and ac103 Genes Are Newly Discovered Core Genes in the Family Baculoviridae

(2012) M. J. Garavaglia et al.   JOURNAL OF VIROLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Virus population bottlenecks during within-host progression and host-to-host transmission

(2012) Serafín Gutiérrez et al.   Current Opinion in Virology

Genetic drift

(2011) Joanna Masel   CURRENT BIOLOGY

Baculovirus Per Os Infectivity Factors Form a Complex on the Surface of Occlusion-Derived Virus

(2010) K. Peng et al.   JOURNAL OF VIROLOGY

Quasispecies Theory and the Behavior of RNA Viruses

(2010) Adam S. Lauring et al.   PLoS Pathogens

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Defective interfering viruses and their potential as antiviral agents

(2009) A. C. Marriott et al.   REVIEWS IN MEDICAL VIROLOGY

Rates of evolutionary change in viruses: patterns and determinants

(2008) Siobain Duffy et al.   NATURE REVIEWS GENETICS